PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10022854m
Common NameEUTSA_v10022854mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GATA
Protein Properties Length: 203aa    MW: 22389.3 Da    PI: 8.2179
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10022854mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.97.6e-2093127135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++C tt+TplWR+gp g+k+LCnaCG++++k+++
  Thhalv10022854m  93 CASCDTTSTPLWRNGPKGPKSLCNACGIRFKKEER 127
                      ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.19E-1387127No hitNo description
PROSITE profilePS5011413.46887123IPR000679Zinc finger, GATA-type
SMARTSM004013.2E-1987139IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.7E-1791127IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.76E-1392124No hitNo description
PROSITE patternPS00344093118IPR000679Zinc finger, GATA-type
PfamPF003201.7E-1793127IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MMGYQTNPNF SMFFSSENDD QNHQNYDPYN NLSSSTSVDC TLSLGTPSTR LDDHRRFSSA  60
SSNISGDFFF HGGNAKTTSY KKSNGDHNLP RRCASCDTTS TPLWRNGPKG PKSLCNACGI  120
RFKKEERRAS ARNSIISGGG SSAAEIPAEN LYRGGGNYYS HHHHYASSSP SWAHQNTQRV  180
PYFSPAPEME YDVTAASYLS WN*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00110ampDAPTransfer from AT2G18380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10022854m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006409160.11e-150GATA transcription factor 20
SwissprotQ9ZPX01e-114GAT20_ARATH; GATA transcription factor 20
TrEMBLV4MDP81e-149V4MDP8_EUTSA; Uncharacterized protein
STRINGXP_006409160.11e-150(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61591746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.12e-98GATA transcription factor 20
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]