PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10022816m
Common NameEUTSA_v10022814mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HD-ZIP
Protein Properties Length: 261aa    MW: 30390.1 Da    PI: 9.6748
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10022816mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.82.2e-19102155457
                      -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                      ++++++eq++ Le  F  ++++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  Thhalv10022816m 102 KRKLSDEQVRFLEMSFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 155
                      45899***********************************************95 PP
2HD-ZIP_I/II122.32.5e-39101192293
      HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      +kr+ls+eqv++LE+sF  e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k lE +y++Lk+a+++++ e++rL++ev +L+e+l++
  Thhalv10022816m 101 RKRKLSDEQVRFLEMSFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKSLEDEYTKLKNAHENVVVEKCRLDSEVLHLKEQLHD 192
                      8****************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.07E-1795157IPR009057Homeodomain-like
PROSITE profilePS5007116.63396156IPR001356Homeobox domain
SMARTSM003899.4E-2099160IPR001356Homeobox domain
CDDcd000861.51E-16101157No hitNo description
PfamPF000461.1E-16102155IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.4E-20107155IPR009057Homeodomain-like
PRINTSPR000311.8E-5127136IPR000047Helix-turn-helix motif
PROSITE patternPS000270131154IPR017970Homeobox, conserved site
PRINTSPR000311.8E-5136152IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MSSQHETILK IVIKKVRQTK NINLQSKRER RRRFRERTRN MNNQNVNDHN LLIISQMYPS  60
VYTSSVPQQG ESKPVRPRRR RKSKSVAATE GGGDGSNGWF RKRKLSDEQV RFLEMSFGDE  120
HKLESERKDR LASELGLDPR QVAVWFQNRR ARWKNKSLED EYTKLKNAHE NVVVEKCRLD  180
SEVLHLKEQL HDAEREIQRL AQRVEGVSSN SPISSCVSIE ANQTTPFFGD YEIGDDGDGY  240
ENLLYSPDYI DGLEWMSQFM *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12833ERRRRF
27883RRRKSK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10022816m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024016586.11e-165homeobox-leucine zipper protein ATHB-21 isoform X1
SwissprotQ9ZU701e-129ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLV4NUX90.0V4NUX9_EUTSA; Uncharacterized protein
STRINGXP_006409134.11e-170(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18550.11e-106homeobox protein 21
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]