PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10022780m
Common NameEUTSA_v10022780mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 324aa    MW: 36976.6 Da    PI: 10.2369
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10022780mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.52.7e-14631361290
                      HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      k++ l++  + ++eh+++     +++++ e+g sW++ +  +k+++  ++ ++GW++Fv++n L+e  f++F+++g+++f
  Thhalv10022780m  63 KEQFLMIFMRSVSEHELS----GKMKIRAEWGSSWDIGI--SKNPRFyFMEKSGWEKFVRENYLEEDNFLTFTHKGNMGF 136
                      445678888888888755....479**************..******555569*********************999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-121345IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.28E-101547IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.2E-657139IPR003340B3 DNA binding domain
PfamPF023621.0E-1167136IPR003340B3 DNA binding domain
CDDcd100176.52E-970132No hitNo description
PROSITE profilePS508638.72770147IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-1278136IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.28E-1080136IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.22E-11218316IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.7E-10218316IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.768222319IPR003340B3 DNA binding domain
SMARTSM010191.3E-7225318IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MATNPDFLMC KEERKNESFF KVLQGADIYS ENMNVSGKFE SFWFIVKMGL RKLNLSVQRV  60
LKKEQFLMIF MRSVSEHELS GKMKIRAEWG SSWDIGISKN PRFYFMEKSG WEKFVRENYL  120
EEDNFLTFTH KGNMGFNKDG LEIISPPQSM AFFASSSQVK REGGEVVSPD LGPTATETNR  180
EGKFKRKVNS GKKKIKESES SPLIKEAFSA RRDCAGASSS SSAEFTVFIK GSHLKILKIS  240
VSASRNLLPK ERTTFKIHHP DMKKSWNVVY IPRHEQGLSG YFSSGWRILV QEYPVLVGEA  300
CKFTFLKPTE LLLIVSKRAK ETH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10022780m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024016594.11e-132B3 domain-containing protein At2g35310
SwissprotQ5PNU44e-92Y2531_ARATH; B3 domain-containing protein At2g35310
TrEMBLV4LKG00.0V4LKG0_EUTSA; Uncharacterized protein
STRINGXP_006409537.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35310.11e-89B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]