PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10022660m | ||||||||
Common Name | EUTSA_v10022660mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | TALE | ||||||||
Protein Properties | Length: 493aa MW: 54840.4 Da PI: 6.6836 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.8 | 9.1e-09 | 320 | 357 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gLt qV++WF N R + Thhalv10022660m 320 FEHflHPYPKDSDKIMLARQTGLTRGQVSNWFINARVR 357 554459******************************88 PP | |||||||
2 | BELL | 127 | 6.9e-41 | 182 | 253 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqelq+k +kLls+l+eVd++Ykqy++q+q+v+ssF+++ag+g+akpYt+lAl++iSrhFrcL+dai++qi Thhalv10022660m 182 ERQELQSKLSKLLSILDEVDRKYKQYYHQMQIVVSSFDVIAGCGAAKPYTALALQTISRHFRCLRDAISGQI 253 79*********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.3E-67 | 122 | 251 | IPR006563 | POX domain |
Pfam | PF07526 | 1.2E-46 | 128 | 250 | IPR006563 | POX domain |
Gene3D | G3DSA:1.20.5.350 | 1.1E-4 | 137 | 202 | No hit | No description |
SuperFamily | SSF90250 | 5.49E-5 | 139 | 202 | No hit | No description |
PROSITE profile | PS50071 | 11.564 | 298 | 361 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.31E-11 | 301 | 362 | No hit | No description |
SMART | SM00389 | 5.3E-9 | 301 | 365 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.08E-17 | 302 | 368 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-27 | 304 | 367 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.5E-17 | 318 | 357 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 493 aa Download sequence Send to blast |
MATYYKSNGS SDIYSRPNLA EFVPGNAMIY TNPVVSYSET FPGEANNVSA SKEIQVLSSF 60 GGASQMMEIQ DSGSWRDQED NDRNSFPVMM RPTTGQRLSL GLSSQIETTR GNNNEYATQV 120 VSGFTRTIHN SKYLKAAQQL LDEAVNVKKA LKQFQPEGDK IDEEKEKTLQ ESCTNPDIPQ 180 GERQELQSKL SKLLSILDEV DRKYKQYYHQ MQIVVSSFDV IAGCGAAKPY TALALQTISR 240 HFRCLRDAIS GQILVIRKSL GGEHDGLDGK GVGISRLRNV DQQVRQQRAL QRLGMMQPHT 300 WRPQRGLPDS SVLILRAWLF EHFLHPYPKD SDKIMLARQT GLTRGQVSNW FINARVRLWK 360 PMVEEMYKEE FTDALEENGP NLSSGNTPET IEVQEQQIES SSNNGQVSGV AMGQNTVACG 420 GDRFMMVRRS GSGGGMSLTL GIQNSDARGD VSMSGGRDNY ENAIPGTDFQ YLNSANHQHR 480 LGSSQMLHDF VA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-15 | 307 | 365 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 2e-15 | 307 | 365 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 2e-15 | 307 | 364 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 2e-15 | 307 | 364 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10022660m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY056796 | 0.0 | AY056796.1 Arabidopsis thaliana At2g16400/F16F14.10 mRNA, complete cds. | |||
GenBank | BT000609 | 0.0 | BT000609.1 Arabidopsis thaliana putative homeodomain transcription factor (At2g16400/F16F14.10) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024016509.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
Refseq | XP_024016510.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
Swissprot | Q9SIW1 | 0.0 | BLH7_ARATH; BEL1-like homeodomain protein 7 | ||||
TrEMBL | V4M781 | 0.0 | V4M781_EUTSA; Uncharacterized protein | ||||
STRING | XP_006409439.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2869 | 25 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16400.1 | 0.0 | BEL1-like homeodomain 7 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10022660m |
Entrez Gene | 18025832 |
Publications ? help Back to Top | |||
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