PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10022336m
Common NameEUTSA_v10022336mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 390aa    MW: 44294.6 Da    PI: 6.9458
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10022336mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.11.8e-1422941187
                     HHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3 11 lksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
                     + s+ l +p  f+++h  g  +  +  ++l++  s  +Wevk+  ++++    lt+GW++F+ +++L++gD+v+F++dg+
  Thhalv10022336m 22 FHSH-LNIPMAFFSKHleGTTNLDNAVVKLRSdASDITWEVKM--DGRR----LTQGWQNFATSHDLRVGDIVIFRHDGD 94
                     4555.99*********97444445667888886888*******..9998....***********************8875 PP
2B352.68.2e-17148232488
                      E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      + +++++l++++l lp +fa+++g+ + ++ + +l +e+g+ W++ l+y+kk ++  ++++GW++F++an+ +++  ++Fkl++++
  Thhalv10022336m 148 ARVTASNLSKDLLFLPMDFARSNGLMN-RHCETILLNEDGKPWTLFLKYTKKTQSrAYIARGWRSFCRANEKRANCLLTFKLVQTE 232
                      5678999****************8775.5569999**************55555559************************99863 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-216107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-207107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.74411105IPR003340B3 DNA binding domain
CDDcd100175.91E-1612102No hitNo description
SMARTSM010191.6E-2014105IPR003340B3 DNA binding domain
PfamPF023621.7E-92494IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-16139231IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.67E-17141230IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.069145246IPR003340B3 DNA binding domain
SMARTSM010199.8E-17145236IPR003340B3 DNA binding domain
CDDcd100171.13E-16145233No hitNo description
PfamPF023622.0E-15148232IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MENATAFSPT NPHFFQPLLP GFHSHLNIPM AFFSKHLEGT TNLDNAVVKL RSDASDITWE  60
VKMDGRRLTQ GWQNFATSHD LRVGDIVIFR HDGDLLFNVT SFGPSCCEIQ YDDDDVVQIA  120
SVETDSDPDK YQHTREAGSS SDHSCFLARV TASNLSKDLL FLPMDFARSN GLMNRHCETI  180
LLNEDGKPWT LFLKYTKKTQ SRAYIARGWR SFCRANEKRA NCLLTFKLVQ TEMGKDSQKS  240
QTADSTQPLS LESLSHTLMQ SITSQVEFEK QTTLQFASID SKFSELIAVL KKGSDRKDEV  300
LEFSNPNYSS QARQVRFPDS ATDNHHRSTD SSTGNTIINS REGMLKRIDL PVFDGADVYG  360
WIALAERFFQ NWRLSRRCKA RNRLDQFGW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10022336m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894312e-72AC189431.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB068B07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018487473.11e-115PREDICTED: B3 domain-containing protein REM10-like
SwissprotP0DH854e-77REM10_ARATH; B3 domain-containing protein REM10
TrEMBLV4M9580.0V4M958_EUTSA; Uncharacterized protein
STRINGXP_006407475.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.12e-79B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]