PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10022304m | ||||||||
Common Name | EUTSA_v10022304mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | CPP | ||||||||
Protein Properties | Length: 367aa MW: 41347.2 Da PI: 8.069 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 45 | 2.1e-14 | 71 | 110 | 2 | 42 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++kgC+C++skClk+YC+Cfa+g+ C++ C C dC+N++++ Thhalv10022304m 71 KHKGCRCRQSKCLKLYCDCFASGVLCND-CDCGDCHNNSKN 110 789*************************.********9875 PP | |||||||
2 | TCR | 49.3 | 9.9e-16 | 155 | 192 | 4 | 41 |
TCR 4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +gC+Ck++kClkkYCeCf+a+ Cs++CkC +CkN +e Thhalv10022304m 155 RGCKCKRTKCLKKYCECFQANLLCSDNCKCINCKNVSE 192 79*********************************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 4.2E-15 | 70 | 110 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 29.337 | 71 | 192 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.3E-11 | 73 | 107 | IPR005172 | CRC domain |
SMART | SM01114 | 1.1E-15 | 152 | 193 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 2.7E-12 | 155 | 190 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MICKVDSGAI ATKKNPRELV FTKLELSPVV LESPVRELAL FPPISRYCSK EPLATPGTKD 60 KTDQEGITWR KHKGCRCRQS KCLKLYCDCF ASGVLCNDCD CGDCHNNSKN CDLREAAVMS 120 VLDRKPNAFS EKHFSSKIDK QYKAAPDTKL GVLSRGCKCK RTKCLKKYCE CFQANLLCSD 180 NCKCINCKNV SEEIQPSRNS CPAPLSSIPD NFILNSLGSP MYSSPKLPYR KKRSRLGYTT 240 TTRLPDFGDI RSLLLAASES AIANAVNIPV LEQQSDQNRI CKKPDDKEDI NDNELSNESE 300 SSNVEDDIQS CGRLIELIDA QYNGEEDSHY KTKKSGHDTD IYMEQERAVL ETFRDCLHKY 360 IKIKFIK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 4e-19 | 70 | 192 | 9 | 123 | Protein lin-54 homolog |
5fd3_B | 4e-19 | 70 | 192 | 9 | 123 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10022304m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ630495 | 1e-119 | AJ630495.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At3g16160. | |||
GenBank | DQ653089 | 1e-119 | DQ653089.1 Arabidopsis thaliana clone 0000013135_0000009456 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024015245.1 | 0.0 | protein tesmin/TSO1-like CXC 8 | ||||
Swissprot | Q700D0 | 1e-173 | TCX8_ARATH; Protein tesmin/TSO1-like CXC 8 | ||||
TrEMBL | V4M7I2 | 0.0 | V4M7I2_EUTSA; Uncharacterized protein (Fragment) | ||||
STRING | XP_006406870.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14844 | 15 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16160.1 | 1e-145 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10022304m |
Entrez Gene | 18024265 |