PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10022197m | ||||||||
Common Name | EUTSA_v10022197mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | MYB_related | ||||||||
Protein Properties | Length: 134aa MW: 15188.1 Da PI: 8.5121 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.4 | 3.3e-18 | 3 | 46 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+++++++lG++ W++Ia++++ gRt++++k++w++ Thhalv10022197m 3 RGNITAEEQLLIIQLHAKLGNR-WSKIAKHLP-GRTDNEIKNFWRT 46 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.369 | 1 | 52 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-16 | 2 | 50 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.49E-14 | 3 | 55 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.5E-17 | 3 | 46 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-21 | 4 | 47 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.16E-13 | 7 | 46 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
VRRGNITAEE QLLIIQLHAK LGNRWSKIAK HLPGRTDNEI KNFWRTKIQR HMKVSSSEKM 60 DIRQYCSGNS QSSVMTTMDQ SSSSKALDMA ESLISPVTTT TSSFHVLEQS NDSYWNVEDL 120 WPVQLLNGDH QVI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting redundantly with MYB21 and MYB24 to control stamen filament elongation in the late developed flowers. Repressed at the transcript levels by DELLA proteins. {ECO:0000269|PubMed:19325888}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10022197m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006408520.2 | 2e-95 | transcription factor MYB57 | ||||
Swissprot | Q9SSA1 | 1e-65 | MYB57_ARATH; Transcription factor MYB57 | ||||
TrEMBL | V4MBZ1 | 4e-94 | V4MBZ1_EUTSA; Uncharacterized protein (Fragment) | ||||
STRING | XP_006408520.1 | 7e-95 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01530.1 | 5e-68 | myb domain protein 57 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10022197m |
Entrez Gene | 18024528 |