PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10022157m
Common NameEUTSA_v10022157mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family M-type_MADS
Protein Properties Length: 386aa    MW: 43731.7 Da    PI: 8.9817
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10022157mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.42.1e-141151343
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                     +en+  r v++ kRr g+ KK  EL +LCd+++++i+fs++
  Thhalv10022157m 11 VENENSRAVSLKKRRLGLVKKVRELTILCDVKACMILFSPD 51
                     699************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.2E-22160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.236149IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.81E-20294IPR002100Transcription factor, MADS-box
CDDcd002661.35E-25285No hitNo description
PRINTSPR004048.1E-9323IPR002100Transcription factor, MADS-box
PfamPF003196.9E-151151IPR002100Transcription factor, MADS-box
PRINTSPR004048.1E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004048.1E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MTRKKIRLAW VENENSRAVS LKKRRLGLVK KVRELTILCD VKACMILFSP DEVEPMVWPS  60
VAAARDLLDE FSALPDVVKK KKETSLESYL KEKTRKIHEK LKKSHKKNTE YVINQLMMQL  120
RRGREIADLD LSEIYGLLSF SKDKIMHFRK RLNLVQRPPL REPPMYPFEA QSEELRTTAN  180
DIFTIRGGQY NEGAMNIDEA AKRISIGTVR ENQSHYLMDQ WIFPSSEPPI PQGHQQIGMG  240
VASYNANPVT TRCYLAYQGS SSIRNPNLEM EPIGPPATTF HGLVGSVSQP LQLNHNMNNN  300
PIMAMSQPRQ YPFDSMSRQL GVKEEGSNIN NGDSQFHWSS NTMTTNDGLH QEPPPPNEAT  360
AGEGNVDATS FDVNRVWPGN NSHHF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
117TRKKIRL
2224RKKIRLAWVENENSRAVSLKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10022157m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407408.10.0agamous-like MADS-box protein AGL17
TrEMBLV4NQI00.0V4NQI0_EUTSA; Uncharacterized protein
STRINGXP_006407408.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47241446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.11e-128AGAMOUS-like 48