PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10022138m
Common NameEUTSA_v10022138mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 322aa    MW: 36694.4 Da    PI: 10.2893
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10022138mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.42.6e-1819111197
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrsefelv 93 
                      ffk++ ++d +++++  +p +f++  + +k  s +++++ ++g sWev++  +k+++ y+++  GW++Fv++  L +++fv+F+++g+++f  +
  Thhalv10022138m  19 FFKIFQSADLSSECMRAIPYNFMKGLS-NKDFSYKMVIRAQWGSSWEVEV--SKNPRFYYIEkPGWNQFVSDLALGDNEFVTFTHKGKMCF--N 107
                      99*********************7774.56799*****************..******777737**********************99**9..6 PP

                      EEEE CS
               B3  94 vkvf 97 
                      v ++
  Thhalv10022138m 108 VNIY 111
                      6665 PP
2B338.52e-122323031387
                      TT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3  13 sgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      ++ l++pk+f eeh   ++es+  t+ +++g  sW+v +    +  r+v+++GW++ +++  L +gD +++kl++ 
  Thhalv10022138m 232 LKFLSIPKRFGEEHI--PNESMIFTIHHSKGsGSWRVLC--LVREARTVFSSGWSKLAREYPLLVGDKCTLKLIKP 303
                      4679**********5..4588999999988779******..888889*************************9874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-1714115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-1815118IPR015300DNA-binding pseudobarrel domain
CDDcd100172.61E-1518111No hitNo description
PROSITE profilePS5086311.98419114IPR003340B3 DNA binding domain
PfamPF023621.7E-1619111IPR003340B3 DNA binding domain
SMARTSM010196.5E-2019114IPR003340B3 DNA binding domain
SuperFamilySSF1019365.49E-17218308IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-15218307IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.278220314IPR003340B3 DNA binding domain
CDDcd100171.06E-11221310No hitNo description
SMARTSM010196.5E-12223313IPR003340B3 DNA binding domain
PfamPF023621.8E-10230305IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGRNRGFDRI KDERKDLSFF KIFQSADLSS ECMRAIPYNF MKGLSNKDFS YKMVIRAQWG  60
SSWEVEVSKN PRFYYIEKPG WNQFVSDLAL GDNEFVTFTH KGKMCFNVNI YQQDGKELVM  120
PPTMAPSSGI KKEQGESSHA DVKKEVETGE SMGGEELKVR KKKSEESKTY KKMKSKNVVN  180
SVEIGESSRG VEHKVIKKNA EKAKTSKKRE ITSCKVKNGV PEFTITIRKS YLKFLSIPKR  240
FGEEHIPNES MIFTIHHSKG SGSWRVLCLV REARTVFSSG WSKLAREYPL LVGDKCTLKL  300
IKPTELLLIS KKARENISMI G*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10022138m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406779.10.0B3 domain-containing protein At3g17010
SwissprotQ9LSP61e-125Y3701_ARATH; B3 domain-containing protein At3g17010
TrEMBLV4M0A50.0V4M0A5_EUTSA; Uncharacterized protein
STRINGXP_006406779.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17010.11e-120B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]