PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10022102m
Common NameEUTSA_v10022102mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family M-type_MADS
Protein Properties Length: 284aa    MW: 32700.8 Da    PI: 8.4056
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10022102mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.66.1e-221762449
                     -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     +n+ n qvtfskRr g++KKA+EL++LC+ae+a+i+fs+  k++ +
  Thhalv10022102m 17 KNENNLQVTFSKRRSGLFKKASELCTLCGAEIALIVFSPGRKVFSF 62
                     8999***********************************9999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.432666IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-32665IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-28787IPR002100Transcription factor, MADS-box
CDDcd002651.33E-35782No hitNo description
PRINTSPR004048.3E-19828IPR002100Transcription factor, MADS-box
PfamPF003195.1E-241662IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-192843IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-194364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MARKNKGRQK IEMVKMKNEN NLQVTFSKRR SGLFKKASEL CTLCGAEIAL IVFSPGRKVF  60
SFGHPNVGHV IDRFLNHNPP HLHQQTNMQL NEIRRNVVIR DLNDQLTEVT EQLEVEKKRN  120
EDLKKRRKES KMPENWWEEP IERMNLTQLN AFKCGLENLR KSVTAEASKY LQATVPHHNF  180
YAGSSSNAAF GDDGNMINTH LDLFNHRRMV SMNTFNCNHN MMIVPVPDHH TTAPFPSNGD  240
NNVPQGFAPE DNQNQNQYCF KQENISECDH HPDHPPHFGH GYH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-17792286MEF2C
5f28_B3e-17792286MEF2C
5f28_C3e-17792286MEF2C
5f28_D3e-17792286MEF2C
6bz1_A3e-17795290MEF2 CHIMERA
6bz1_B3e-17795290MEF2 CHIMERA
6bz1_C3e-17795290MEF2 CHIMERA
6bz1_D3e-17795290MEF2 CHIMERA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123127KKRRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10022102m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0114832e-62AB011483.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUF9.
GenBankAY1412362e-62AY141236.1 Arabidopsis thaliana MADS-box protein AGL62 mRNA, complete cds.
GenBankCP0026882e-62CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankEU4930932e-62EU493093.1 Arabidopsis thaliana MADS-box protein AGL62 (AGL62) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406472.10.0agamous-like MADS-box protein AGL62
SwissprotQ9FKK21e-108AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLV4LBV30.0V4LBV3_EUTSA; Uncharacterized protein
STRINGXP_006406472.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-106AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]