PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10022066m
Common NameEUTSA_v10022066mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 295aa    MW: 33259.8 Da    PI: 8.1515
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10022066mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.23.9e-182471148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l+++++ +G ++W+++++  g+ R++k+c++rw +yl
  Thhalv10022066m 24 RGLWSPEEDEKLLRYITTHGHPSWSSVPKLAGLQRCGKSCRLRWINYL 71
                     788*******************************************97 PP
2Myb_DNA-binding51.62.1e-1677120146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++ +eE++ ++d+++ lG++ W+ Ia++++ gRt++++k++w++
  Thhalv10022066m  77 RGSFNAEEEQTIIDVHRILGNK-WAQIAKHLP-GRTDNEVKNFWNS 120
                      899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-251674IPR009057Homeodomain-like
PROSITE profilePS5129417.6531971IPR017930Myb domain
SuperFamilySSF466899.73E-2922118IPR009057Homeodomain-like
SMARTSM007171.1E-122373IPR001005SANT/Myb domain
PfamPF002491.3E-152471IPR001005SANT/Myb domain
CDDcd001676.50E-112771No hitNo description
PROSITE profilePS5129425.52172126IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-2575126IPR009057Homeodomain-like
SMARTSM007174.3E-1576124IPR001005SANT/Myb domain
PfamPF002497.7E-1577120IPR001005SANT/Myb domain
CDDcd001676.18E-1179119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MKEKWEMKRD EMGHRCCGKH KVKRGLWSPE EDEKLLRYIT THGHPSWSSV PKLAGLQRCG  60
KSCRLRWINY LRPDLKRGSF NAEEEQTIID VHRILGNKWA QIAKHLPGRT DNEVKNFWNS  120
CIKKKLLSQG LDPSTHNLLP SHKRSSFSNN NSIPKPSKTK NILKDPTLDQ SATAFSITNI  180
NPPTSTKPNR LKSPNRTPIP CQTKISINDT MSSLLDDDNM IPNWSDVDGM APIHEAPMLL  240
GEKAVVGVDD DDDLNMDILF NTPSSSSFDP DFASIFSSAM SIDFNPMDDL GWTF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29241267108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10022066m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0395540.0AY039554.1 Arabidopsis thaliana AT3g12720/MBK21_8 mRNA, complete cds.
GenBankAY1021550.0AY102155.1 Arabidopsis thaliana AT3g12720/MBK21_8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407302.10.0myb-related protein 308
TrEMBLV4LE560.0V4LE56_EUTSA; Uncharacterized protein
STRINGXP_006407302.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79552539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.11e-164myb domain protein 67