PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10021974m
Common NameEUTSA_v10021974mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HD-ZIP
Protein Properties Length: 709aa    MW: 79559.1 Da    PI: 7.3313
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10021974mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.46.9e-202979656
                     S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     ++t++q+++Le++F+++++p++++r++L k+l+L+ +q+k+WFqN+R++ k
  Thhalv10021974m 29 RHTPQQIQRLEAYFKECPHPDESQRQQLCKELNLEPDQIKFWFQNKRTQSK 79
                     68**********************************************988 PP
2START98.61.2e-312204404206
                      HHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
            START   4 eeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                       +a +el ++   ee++Wvkss       ++e++++   ++++ ++   ++e +++ +v++  +++lve +ld+  +W++ ++    +a t+ +
  Thhalv10021974m 220 ASAVEELKRLFFTEEAFWVKSSvdgtyviDQEMYEKFSHTVKRFRNmsARVESSKDATVLPIGATNLVEMFLDSE-KWKNLFPtivnSAVTVHR 312
                      66778888888899***********999999999988888866555889**************************.****9999999******* PP

                      ECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
            START  85 issg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                      + s+       +++q++      lsplvp R+f++vR+++q  +g w+i+dvS +  ++ + ++s+ +   +pSg+li+ +sn hs+v w+ehv
  Thhalv10021974m 313 LGSQlpikencNVVQVIWERIHILSPLVPpREFMIVRCCQQIDEGLWIIADVSHSIVNFDQVNPSCYK---RPSGCLIRALSNAHSEVKWIEHV 403
                      *****************************************************999999888888777...*********************** PP

                      E--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 171 dlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                      +++ +   h ++r l+  +    ak+w  +l+r ce+
  Thhalv10021974m 404 EVDHKPEtHRMYRELLCGRSGYSAKRWIVALERMCER 440
                      ***99778***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.96E-181181IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.2E-201382IPR009057Homeodomain-like
SMARTSM003892.7E-162185IPR001356Homeobox domain
PROSITE profilePS5007116.6012181IPR001356Homeobox domain
CDDcd000865.35E-172281No hitNo description
PfamPF000461.9E-172979IPR001356Homeobox domain
PROSITE profilePS5084836.34208443IPR002913START domain
SuperFamilySSF559618.79E-22210441No hitNo description
CDDcd088751.29E-78213439No hitNo description
SMARTSM002346.3E-14217440IPR002913START domain
Gene3DG3DSA:3.30.530.209.4E-5219406IPR023393START-like domain
PfamPF018521.2E-25220440IPR002913START domain
SuperFamilySSF559611.06E-9460674No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MNYDGGGSAG NGQCTSPNAK KREKRICHRH TPQQIQRLEA YFKECPHPDE SQRQQLCKEL  60
NLEPDQIKFW FQNKRTQSKA QDERNANILL RGENEKIQCE NDAMLEALKN VICPACGGPP  120
FGSDEREHNL QKLRLENALL KEKRDKIASF VSKNKHQQIM VESFAPAQQI VDTRTLYGTT  180
NPSNLLFEPP SSLRPPTSQT IQPQPLLSHM DIPRLTETAA SAVEELKRLF FTEEAFWVKS  240
SVDGTYVIDQ EMYEKFSHTV KRFRNMSARV ESSKDATVLP IGATNLVEMF LDSEKWKNLF  300
PTIVNSAVTV HRLGSQLPIK ENCNVVQVIW ERIHILSPLV PPREFMIVRC CQQIDEGLWI  360
IADVSHSIVN FDQVNPSCYK RPSGCLIRAL SNAHSEVKWI EHVEVDHKPE THRMYRELLC  420
GRSGYSAKRW IVALERMCER IALSSILTIP ATDWSEAINT GEGRKSVMKL GERMLKNFND  480
MLTMSGKVDF PQHSKCGVRI SIRMNMEPGQ PTGLVVSAAS CLSIPLSPLQ VFNCLRDNNT  540
RHQWDVLCYG KVSEIARVFT GSSETNYLNI LRPPRREDIA ISMAQDSDND NMLMLQDCYM  600
DALGGMIVYA PLDETTMNIA ASGEVDASKI PILPSGFTIS GDGRRSMAAE DGGVGHDGGT  660
LLTVAFQILV SGKITRSREL NEKSVDTVSS LISGTVQKIK LLLNCPHV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10021974m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408322.10.0homeobox-leucine zipper protein HDG8
SwissprotQ9M9P40.0HDG8_ARATH; Homeobox-leucine zipper protein HDG8
TrEMBLV4LGW80.0V4LGW8_EUTSA; Uncharacterized protein
STRINGXP_006408322.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM127911530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03260.10.0homeodomain GLABROUS 8