PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10021948m | ||||||||
Common Name | EUTSA_v10021948mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | TCP | ||||||||
Protein Properties | Length: 405aa MW: 46367.5 Da PI: 7.217 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 135.9 | 3.4e-42 | 154 | 313 | 2 | 133 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................ssssasec.. 73 + +kdrhski T++g RdRR+Rls+e+a+++F Lqd+LGfdk+skt+eWLl+qakp+i++++++ s +++s+ Thhalv10021948m 154 PSRKDRHSKIKTAKGTRDRRMRLSLEVAKELFGLQDMLGFDKASKTVEWLLTQAKPEIIKIAKSlsnhggfssgeesqtqpalgSMDTSSDLce 247 579*************************************************************888888877777655555442222222223 PP TCP 74 ..eaesssssasnsssg.................kaaksaakskksqksaasalnlakesrakarararertrekmrik 133 + ++++ k+k sq +++ +l+k+srakar+ra+ert+ekm+++ Thhalv10021948m 248 laS-------------MwtvddrgsntnttetqgNKRSMRGKRKMSQPRTTILKKLSKDSRAKARERAKERTKEKMMKR 313 231.............0222222223444455657777777999999999999***********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.0E-42 | 155 | 312 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.197 | 156 | 214 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 11.301 | 292 | 309 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence Send to blast |
MNNNTFSTTS TNNEDYMLFP YNDHYSSQPI LPFSPSSSIN DILIHSNFNT PNNHLDHHHP 60 HHQFLQATSS PFSQFEFVPD FTLLASFLPQ NNGHYDNQTI TTTDHHHHHP SLLPLNNPTG 120 ESQLVEPSET ITHIEDCQRF STSQDPEMKR LKRPSRKDRH SKIKTAKGTR DRRMRLSLEV 180 AKELFGLQDM LGFDKASKTV EWLLTQAKPE IIKIAKSLSN HGGFSSGEES QTQPALGSMD 240 TSSDLCELAS MWTVDDRGSN TNTTETQGNK RSMRGKRKMS QPRTTILKKL SKDSRAKARE 300 RAKERTKEKM MKRRLQVNVV QEEAPNQYGE NNKSDVNWSS FDQATTCEEE MEELCNNDRF 360 AVRNEFLLNK KDHISDEAYD MINKLNSSFP MLNHHRSQGA ATSIE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that prevents axillary bud outgrowth and delays early axillary bud development. Indirectly required for the auxin-induced control of apical dominance. {ECO:0000269|PubMed:17307924, ECO:0000269|PubMed:17452340}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10021948m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced during environmentally induced bud dormancy (planting density). Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269|PubMed:17307924}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006406593.2 | 0.0 | transcription factor TCP18 | ||||
Swissprot | A1YKT1 | 0.0 | TCP18_ARATH; Transcription factor TCP18 | ||||
TrEMBL | V4NNJ8 | 0.0 | V4NNJ8_EUTSA; Uncharacterized protein (Fragment) | ||||
STRING | XP_006406593.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7269 | 27 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.1 | 1e-169 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10021948m |
Entrez Gene | 18023690 |