PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10021945m
Common NameEUTSA_v10021945mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family M-type_MADS
Protein Properties Length: 222aa    MW: 25906.8 Da    PI: 8.1739
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10021945mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.74.2e-151252444
                     -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
           SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                      n+ +r +++ kR+ g+ KK  EL +LCd+++++iifs+++
  Thhalv10021945m 12 ANENKRATSLRKRKLGLVKKVRELTILCDVKACLIIFSPND 52
                     58999*********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-21160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.1151IPR002100Transcription factor, MADS-box
CDDcd002661.58E-25384No hitNo description
SuperFamilySSF554552.09E-21394IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-8323IPR002100Transcription factor, MADS-box
PfamPF003198.1E-151252IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MPRKKIRLTL VANENKRATS LRKRKLGLVK KVRELTILCD VKACLIIFSP NDAEPMVWPS  60
VEAARDLLDD YFALPEFEKK QNETTLESYL KEKTRKVHEQ LTEIKKKNTE QVIDQLMVQL  120
SSGRRMDDLN LSEIYQLLSF LKGAIMNFRK RLSFLQQPPL YDPPMHPFET QSEELIRTNA  180
NDVFMVGSGQ DYERAENTDE GDKVLSIGTV RENQSYYLMD KW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKIRLTLVANENKRATSLRKRK
22025LRKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10021945m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407409.21e-165agamous-like MADS-box protein AGL80
TrEMBLV4M2071e-163V4M207_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006407409.11e-164(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47241446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.12e-67AGAMOUS-like 48