PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10021708m | ||||||||
Common Name | EUTSA_v10021708mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | GATA | ||||||||
Protein Properties | Length: 149aa MW: 16272.7 Da PI: 10.6743 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56.6 | 3.4e-18 | 41 | 74 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C+ Cgt+kTplWR gp g+k+LCnaCG+++rkk+ Thhalv10021708m 41 CAICGTSKTPLWRGGPAGPKSLCNACGIRNRKKR 74 999*****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 9.7E-14 | 35 | 86 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.387 | 35 | 71 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.5E-13 | 37 | 81 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 6.0E-15 | 39 | 74 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.01E-13 | 40 | 96 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 41 | 66 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 3.1E-16 | 41 | 74 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MLLFPIFDSE AMKSSKFTSA DAIEESSSSS NGGISNEKKS CAICGTSKTP LWRGGPAGPK 60 SLCNACGIRN RKKRRIVIGN RSEDKKKKKN PTRNSKLGDS LKQRLMELGR EVMLQRSTAE 120 NQRRKKLGEE EQAAVLLMAL SYASSVYA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 72 | 88 | KRRIVIGNRSEDKKKKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00335 | DAP | Transfer from AT3G06740 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10021708m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006407908.1 | 1e-104 | GATA transcription factor 15 isoform X1 | ||||
Swissprot | Q8LG10 | 1e-77 | GAT15_ARATH; GATA transcription factor 15 | ||||
TrEMBL | V4NRR8 | 1e-103 | V4NRR8_EUTSA; Uncharacterized protein | ||||
STRING | XP_006407908.1 | 1e-103 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5050 | 26 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06740.1 | 3e-67 | GATA transcription factor 15 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10021708m |
Entrez Gene | 18024875 |
Publications ? help Back to Top | |||
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