PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10021334m
Common NameEUTSA_v10021334mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HD-ZIP
Protein Properties Length: 267aa    MW: 30666.1 Da    PI: 6.4047
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10021334mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.21.2e-1774126456
                      -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      + +++ eq+++Le+ Fe  +++  e++ +LAk lg++ rq+ +WFqNrRa++k
  Thhalv10021334m  74 KKRLQLEQVKALEKSFEIGNKLEPERKIQLAKALGMQPRQIAIWFQNRRARWK 126
                      4457889*********************************************9 PP
2HD-ZIP_I/II123.79e-4072163192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      ekk+rl+ eqvk+LE+sFe  +kLeperK +la++Lg+qprq+a+WFqnrRAR+kt+qlE+dy++Lk+++++lk++n++L ++++ L +e++
  Thhalv10021334m  72 EKKKRLQLEQVKALEKSFEIGNKLEPERKIQLAKALGMQPRQIAIWFQNRRARWKTRQLERDYDSLKKQFESLKSDNDSLLSHNKILLAEVM 163
                      69***********************************************************************************9998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.84E-1965130IPR009057Homeodomain-like
SMARTSM003891.8E-1671132IPR001356Homeobox domain
PROSITE profilePS5007115.98572128IPR001356Homeobox domain
CDDcd000865.86E-1673129No hitNo description
PfamPF000467.9E-1574126IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-1876136IPR009057Homeodomain-like
PRINTSPR000312.8E-599108IPR000047Helix-turn-helix motif
PROSITE patternPS000270103126IPR017970Homeobox, conserved site
PRINTSPR000312.8E-5108124IPR000047Helix-turn-helix motif
PfamPF021832.9E-14129168IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MAFPQHGFMF QQLHEDNSHD QLPSCPPPHL FHGGVNYMMN RSLSLTNEQG DHHQSVDEEN  60
LSDDGSHMML GEKKKRLQLE QVKALEKSFE IGNKLEPERK IQLAKALGMQ PRQIAIWFQN  120
RRARWKTRQL ERDYDSLKKQ FESLKSDNDS LLSHNKILLA EVMALKKKDC NETSIIKRDA  180
EASWSNNGST ENSSDINLEM PSEATTTHVN TIKDLFPSSI RSSAHQHDQM VQEESFCNIF  240
NGIDETTSAG YWAWSDPNHN HHHQFN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00322DAPTransfer from AT3G01220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10021334m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:12644682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2288900.0AK228890.1 Arabidopsis thaliana mRNA for putative homeobox-leucine zipper protein, complete cds, clone: RAFL16-20-K05.
GenBankAY0876310.0AY087631.1 Arabidopsis thaliana clone 3722 mRNA, complete sequence.
GenBankBT0292210.0BT029221.1 Arabidopsis thaliana At3g01220 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408476.10.0homeobox-leucine zipper protein ATHB-20
SwissprotQ8LAT01e-164ATB20_ARATH; Homeobox-leucine zipper protein ATHB-20
TrEMBLV4M1C00.0V4M1C0_EUTSA; Uncharacterized protein
STRINGXP_006408476.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30952666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01220.11e-167homeobox protein 20