PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10021328m
Common NameEUTSA_v10021328mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family LBD
Protein Properties Length: 269aa    MW: 28757.8 Da    PI: 8.1497
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10021328mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.71e-294107199
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C++dC ++p++     p++q++++ +++k++G++ +++l++a p++ r+ +++sl+ eA+ r+ +P+yG+vg+++++++ql+q
  Thhalv10021328m   4 SCNGCRVLRKGCSEDCSIRPCLawiktPEAQANATVFLAKFYGRAGLMNLINAGPDHLRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQ 97 
                      6********************************************************************************************* PP

           DUF260  90 lkaelallke 99 
                      +++e+++ +e
  Thhalv10021328m  98 AAVEAVMKGE 107
                      ***9988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381551.4E-1021268IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089116.5023109IPR004883Lateral organ boundaries, LOB
PfamPF031957.1E-244104IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSEDCS IRPCLAWIKT PEAQANATVF LAKFYGRAGL MNLINAGPDH  60
LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQAAV EAVMKGEPIT EIATDAATNG  120
QGPPLKMYDI RHNSKDENSA AAAAATGSTD LKRAKTRRTK RVAALAKRAE SEGKSGGEEA  180
SHESSLSHQS EIVAAYEGES KESESNVSEV MTLSPPAVQG SAGEIKLDLT LGLEPVSRAY  240
HVVPVKKRKI GVFGTCQEES PCKTELML*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10021328m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408407.10.0LOB domain-containing protein 41
SwissprotQ9M8861e-172LBD41_ARATH; LOB domain-containing protein 41
TrEMBLV4LH470.0V4LH47_EUTSA; Uncharacterized protein
STRINGXP_006408407.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77212741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-133LOB domain-containing protein 41