PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10021306m | ||||||||
Common Name | EUTSA_v10021306mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | LBD | ||||||||
Protein Properties | Length: 277aa MW: 31543.1 Da PI: 6.4564 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.5 | 6e-40 | 35 | 134 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCaaCk++rrkCa+dC lapyfp++++++f n+hklFG+sn++k++k+l++ e+++am++++++++ara+dPv+G++++i+kl++q+e++++el Thhalv10021306m 35 ACAACKYQRRKCAPDCLLAPYFPHDRHHQFLNAHKLFGVSNITKIIKSLSPPEKDAAMHTIMFQSDARANDPVEGCYSIIRKLHHQIECTRNEL 128 7********************************************************************************************* PP DUF260 95 allkee 100 + + ++ Thhalv10021306m 129 EIVLQQ 134 998776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.774 | 34 | 135 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.6E-37 | 35 | 131 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MPSGKPSSVF PLHPKPTPLK SSSSTSNSNN STNQACAACK YQRRKCAPDC LLAPYFPHDR 60 HHQFLNAHKL FGVSNITKII KSLSPPEKDA AMHTIMFQSD ARANDPVEGC YSIIRKLHHQ 120 IECTRNELEI VLQQLAVLRD RAHNHHHLHH PQESHIQMQE PEDLSSFSSS CDLNNNNNNL 180 IPYNYPLHHV QEQNQQQQQQ QYCSPGTFNG LQEDMWCLQL QDSSTTVNLK SGFIDECEDV 240 KPVEEVSSER HEFENHEDFV EQRKLDLPSA QFIISS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-25 | 25 | 129 | 1 | 105 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-25 | 25 | 129 | 1 | 105 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10021306m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006407159.1 | 0.0 | LOB domain-containing protein 22 | ||||
Swissprot | Q9LRW1 | 1e-161 | LBD22_ARATH; LOB domain-containing protein 22 | ||||
TrEMBL | V4M1D0 | 0.0 | V4M1D0_EUTSA; Uncharacterized protein | ||||
STRING | XP_006407159.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6498 | 26 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 1e-138 | LOB domain-containing protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10021306m |
Entrez Gene | 18024502 |
Publications ? help Back to Top | |||
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