PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10021301m
Common NameEUTSA_v10021301mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family LBD
Protein Properties Length: 278aa    MW: 29486.6 Da    PI: 7.7056
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10021301mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.65.7e-40531541101
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll+++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+ae
  Thhalv10021301m  53 PCGACKFLRRKCVSGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLHHIPVNRRHDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAE 146
                      7***********************9989****************************************************************** PP

           DUF260  94 lallkeel 101
                      l+l++++l
  Thhalv10021301m 147 LSLVQSQL 154
                      ****9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.26352154IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-3953151IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MADQQRGHNT SDSRRQSAAG KRTSSQHTTT SSLSSNGGTM AAAATTGTGA ASPCGACKFL  60
RRKCVSGCIF APHFGSDQGA ARFAAVHKVF GASNVSKLLH HIPVNRRHDA VVTISYEAQA  120
RLSDPVYGCV STILALQQQV ASLQAELSLV QSQLINSRVA MANVMQQQSH HQQQQQQQLV  180
VMQQPEYSNN SSASTTLAGA AMNSFAAAAE VAAAASYDVM ARANLEHSLQ PMPSHQQGRR  240
DHQHEDEEES GADFSVAVGS TAVAPDVIFS EEGFHRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-41431551112LOB family transfactor Ramosa2.1
5ly0_B4e-41431551112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10021301m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738540.0AB473854.1 Arabidopsis thaliana ASL21 mRNA for ASYMMETRIC LEAVES2-like 21 protein, complete cds.
GenBankAK1182910.0AK118291.1 Arabidopsis thaliana At3g03760 mRNA for unknown protein, complete cds, clone: RAFL19-58-F13.
GenBankBT0085890.0BT008589.1 Arabidopsis thaliana clone U50874 unknown protein (At3g03760) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408269.10.0LOB domain-containing protein 20
SwissprotQ9SRV31e-148LBD20_ARATH; LOB domain-containing protein 20
TrEMBLV4M4650.0V4M465_EUTSA; Uncharacterized protein
STRINGXP_006408269.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.11e-111LOB domain-containing protein 20