PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10021244m

Common Name

EUTSA_v10021244mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

NF-YA

Protein Properties

Length: 295aa MW: 31990 Da PI: 9.8929

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10021244m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	93.4	2.7e-29	136	195	2	58
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRaklee...ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 ++YVN+KQy++I++RRq+Rak+++ ++kl++++rkpy+h+SRh hAlrRpRgsgGrF Thhalv10021244m 136 GTIYVNSKQYHGIIRRRQSRAKAAAvlhQNKLSSRCRKPYMHHSRHLHALRRPRGSGGRF 195 689*******************9999*****************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.2E-30	133	198	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	35.013	134	198	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.1E-23	137	195	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	4.6E-21	137	159	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	4.6E-21	172	195	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MAMQTVRESL LSAPQISWWN AFGSQPLAPE SLAGDSDSFA GVKIGSARET EHGVDKQSNS 60 VSRLAFSLGD VKSSSVVPKP HGAAFSMQPP CLELGFAQPP IYTKYPCVEQ QYYGVVSAYG 120 SQSRVLLPLN METEDGTIYV NSKQYHGIIR RRQSRAKAAA VLHQNKLSSR CRKPYMHHSR 180 HLHALRRPRG SGGRFLNTKS QNMEKSGTNA KKSDGTKQAQ TQSQPQQSSS QNSEVVHPES 240 GTMNLSNGLS VSGSEVTSMN YFLSSSLHPL GGMVMPSKWI SAATMDDGCC SFKT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_A	2e-15	135	196	2	60	HAPB protein
4g92_A	2e-15	135	196	2	60	HAPB protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10021244m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352991	0.0	AK352991.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-H06.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006408040.1	0.0	nuclear transcription factor Y subunit A-2
Refseq	XP_006408041.1	0.0	nuclear transcription factor Y subunit A-2
Swissprot	Q9M9X4	0.0	NFYA2_ARATH; Nuclear transcription factor Y subunit A-2
TrEMBL	E4MWU4	0.0	E4MWU4_EUTHA; mRNA, clone: RTFL01-19-H06
TrEMBL	V4MAR2	0.0	V4MAR2_EUTSA; Uncharacterized protein
STRING	XP_006408040.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3008	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05690.1	1e-179	nuclear factor Y, subunit A2

Link Out ? help Back to Top
Phytozome	Thhalv10021244m
Entrez Gene	18023918

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Nasim Z,Fahim M,Ahn JH Possible Role of MADS AFFECTING FLOWERING 3 and B-BOX DOMAIN PROTEIN 19 in Flowering Time Regulation of Arabidopsis Mutants with Defects in Nonsense-Mediated mRNA Decay. Front Plant Sci, 2017. 8: p. 191 [PMID:28261246] Zhang M,Hu X,Zhu M,Xu M,Wang L Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis. Sci Rep, 2017. 7(1): p. 1395 [PMID:28469131]