PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10021225m
Common NameEUTSA_v10021225mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 302aa    MW: 34854.3 Da    PI: 8.7165
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10021225mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.17.4e-49241513128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                      pGfrFhPtdeelv +yL kkv  kk  +++e+i+++diyk++PwdLp + +++eke yfF+kr +ky+++ r+nr+t sg+Wkatg dk+v+s 
  Thhalv10021225m  24 PGFRFHPTDEELVGFYLSKKVLLKKpSKIDEIISQIDIYKFDPWDLP-RSRNTEKENYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSD 116
                      9*******************877764888889***************.5567789**************************************9 PP

              NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +++++glkktLv+y g+a kg+ktdW+mhe+rl
  Thhalv10021225m 117 gsNKAVIGLKKTLVYYLGSAGKGTKTDWMMHEFRL 151
                      767777***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-5022186IPR003441NAC domain
PROSITE profilePS5100550.81622186IPR003441NAC domain
PfamPF023651.8E-2424151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MEGMMRTRDK IMREEEEEQV LELPGFRFHP TDEELVGFYL SKKVLLKKPS KIDEIISQID  60
IYKFDPWDLP RSRNTEKENY FFCKRGRKYR NSIRPNRVTG SGFWKATGID KPVYSDGSNK  120
AVIGLKKTLV YYLGSAGKGT KTDWMMHEFR LPTANDTIPG GSTHLNPTPS SLLHAEVWTL  180
CRIFKRNVSS RKYTPDWREL AGGKRVKQQQ SKYQEAYNIS FGDNESISSS TNVMESKENY  240
ERNVFQLHQT PHHQHQPIPM DTTQVDTVPH VLNDNIHNIT CENWDELRSV VEFAFGPSSL  300
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-452419219171NO APICAL MERISTEM PROTEIN
1ut4_B5e-452419219171NO APICAL MERISTEM PROTEIN
1ut7_A5e-452419219171NO APICAL MERISTEM PROTEIN
1ut7_B5e-452419219171NO APICAL MERISTEM PROTEIN
3swm_A6e-452419222174NAC domain-containing protein 19
3swm_B6e-452419222174NAC domain-containing protein 19
3swm_C6e-452419222174NAC domain-containing protein 19
3swm_D6e-452419222174NAC domain-containing protein 19
3swp_A6e-452419222174NAC domain-containing protein 19
3swp_B6e-452419222174NAC domain-containing protein 19
3swp_C6e-452419222174NAC domain-containing protein 19
3swp_D6e-452419222174NAC domain-containing protein 19
4dul_A5e-452419219171NAC domain-containing protein 19
4dul_B5e-452419219171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00353DAPTransfer from AT3G12910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10021225m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026861e-110CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407283.10.0transcription factor JUNGBRUNNEN 1
SwissprotQ9SK558e-74NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLV4NQ840.0V4NQ84_EUTSA; Uncharacterized protein
STRINGXP_006407283.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.11e-162NAC family protein
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]