PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10021200m
Common NameEUTSA_v10021200mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 307aa    MW: 34820.1 Da    PI: 7.1787
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10021200mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.61.7e-5551311129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdeel+++yL++kv++  ++  +++ +vd++k+ePwdLp+k++ +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+++
  Thhalv10021200m   5 LPPGFRFHPTDEELITHYLCRKVSDIGFTG-KAVVDVDLNKCEPWDLPAKASMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKTTGKDKEIYR 97 
                      79*************************999.88***************999999**************************************** PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       +g lvg+kktLvfykgrapkgek++Wvmheyrle
  Thhalv10021200m  98 -TGVLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 131
                      .99******************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-643151IPR003441NAC domain
PROSITE profilePS5100560.0535151IPR003441NAC domain
PfamPF023653.9E-296130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEENLPPGFR FHPTDEELIT HYLCRKVSDI GFTGKAVVDV DLNKCEPWDL PAKASMGEKE  60
WYFFSLRDRK YPTGLRTNRA TEAGYWKTTG KDKEIYRTGV LVGMKKTLVF YKGRAPKGEK  120
SNWVMHEYRL ENKQPFKPAK EEWVVCRVFQ KSIATKKPQE QQPQSSQPSF GSPCDANSSM  180
ANEFEDIELP NLNSNSSTVD YNHLHHYSQS SLYSEDNTTS TAGLNMNMNI PAWTTSLLGP  240
PLSPINSLLL KAFQIRNSYS FPKEMISNIN HSPLQQGVSN IMQNGASSSQ VQQQPQEDAF  300
NMDSIW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-57415716171NO APICAL MERISTEM PROTEIN
1ut4_B1e-57415716171NO APICAL MERISTEM PROTEIN
1ut7_A1e-57415716171NO APICAL MERISTEM PROTEIN
1ut7_B1e-57415716171NO APICAL MERISTEM PROTEIN
4dul_A1e-57415716171NAC domain-containing protein 19
4dul_B1e-57415716171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00364DAPTransfer from AT3G18400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10021200m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0266581e-150AB026658.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYF24.
GenBankCP0026861e-150CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406609.10.0NAC domain-containing protein 92
SwissprotQ9FLJ29e-83NC100_ARATH; NAC domain-containing protein 100
TrEMBLV4LZX50.0V4LZX5_EUTSA; Uncharacterized protein
STRINGXP_006406609.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55272649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.10.0NAC domain containing protein 58
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]