PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thhalv10021183m | ||||||||
Common Name | EUTSA_v10021183mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 312aa MW: 35785.6 Da PI: 5.0903 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 49.7 | 4.8e-16 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n+s r+ tf kR+ g KK +ELSvLC++e++ +i+s+ Thhalv10021183m 11 ITNDSMRKATFNKRKRGFVKKIHELSVLCGIEACAVIYSP 50 89************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 17.128 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.8E-21 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-23 | 2 | 94 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 8.22E-34 | 2 | 85 | No hit | No description |
PRINTS | PR00404 | 5.7E-9 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.2E-15 | 11 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.7E-9 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.7E-9 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 312 aa Download sequence Send to blast |
MTRKKLNLAY ITNDSMRKAT FNKRKRGFVK KIHELSVLCG IEACAVIYSP FSSGPEVWPS 60 NSGVKEVVEK FVMLPEIEQE KKMVDHEGFL RQSINKTMEN NDKKTKENKE RMMKEVMFEF 120 LGGQGDMLSL TDKTREDLCK YIDQYLKELY HHRNQTLTQS QLEYGESSSA ADVMAPAAIA 180 EVGPSAFPNP DVFNPPQLLP NELWALRPII PSDPKPEPGM TFGDNFLPAA NDQQVYYQMM 240 NPVGVCDHQL NLHLNDNQYQ NQFGYPNVSQ DGIYNPNQQQ EAWLVNQMMN NPEQMCLPMI 300 EDNNRYYLQQ P* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Thhalv10021183m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006408018.1 | 0.0 | agamous-like MADS-box protein AGL80 isoform X1 | ||||
Swissprot | Q9FJK3 | 4e-51 | AGL80_ARATH; Agamous-like MADS-box protein AGL80 | ||||
TrEMBL | V4NS16 | 0.0 | V4NS16_EUTSA; Uncharacterized protein | ||||
STRING | XP_006408018.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G05860.1 | 1e-101 | M-type_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thhalv10021183m |
Entrez Gene | 18023944 |
Publications ? help Back to Top | |||
---|---|---|---|
|