PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10021048m
Common NameEUTSA_v10021048mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 350aa    MW: 39093.6 Da    PI: 7.9629
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10021048mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.7e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+ +++ +G g+W++ +++ g+ R++k+c++rw +yl
  Thhalv10021048m 14 KGPWTPEEDQKLLAYIEDHGHGSWRSLPEKAGLQRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding50.54.7e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T +E++ +++++++lG++ W++Ia ++  +Rt++++k++w+++l
  Thhalv10021048m  67 RGKFTVQEEQTIIQLHALLGNR-WSAIATHLA-KRTDNEIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-26564IPR009057Homeodomain-like
PROSITE profilePS5129418.016961IPR017930Myb domain
SuperFamilySSF466897.34E-3011108IPR009057Homeodomain-like
SMARTSM007174.3E-141363IPR001005SANT/Myb domain
PfamPF002493.9E-161461IPR001005SANT/Myb domain
CDDcd001672.56E-111661No hitNo description
PROSITE profilePS5129425.94462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.0E-2665117IPR009057Homeodomain-like
SMARTSM007171.7E-1666114IPR001005SANT/Myb domain
PfamPF002493.0E-1567112IPR001005SANT/Myb domain
CDDcd001673.49E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010091Biological Processtrichome branching
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGRSPCCDKA GLKKGPWTPE EDQKLLAYIE DHGHGSWRSL PEKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF TVQEEQTIIQ LHALLGNRWS AIATHLAKRT DNEIKNYWNT HLKKRLVKMG  120
IDPVTHKHKN ETLLSPTGQS KNAATLSHMA QWESARLEAE ARLARESKLL HLQHYQNNNN  180
NNLDKQCFTH KTPANWTKPN DGNGDQQLES PTSTVTSSEN LPLVTRPLGM EPTENRIKSI  240
NRENNNESSG IPANMVELAV TSSTSSGATL VKDSEHDWMR QINSQTEGFE EGFTSLLLAD  300
SIGRGFSASV TGAVAANGSD YSYYEDNKNY WNSILNLVDS SPSDSPTMF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10021048m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2493090.0AF249309.1 Arabidopsis thaliana putative transcription factor (MYB106) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408465.10.0transcription factor MYB106 isoform X2
SwissprotQ9LE630.0MY106_ARATH; Transcription factor MYB106
TrEMBLV4MBR70.0V4MBR7_EUTSA; Uncharacterized protein
STRINGXP_006408465.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.11e-170myb domain protein 106