PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10021042m | ||||||||
Common Name | EUTSA_v10021042mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | MYB | ||||||||
Protein Properties | Length: 351aa MW: 39436.3 Da PI: 7.3855 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.9 | 2.3e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g+W++++++ g+ R++k+c++rw +yl Thhalv10021042m 14 RGLWSPEEDEKLINYINTYGHGCWSSVPKHAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.4 | 2.1e-15 | 67 | 109 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+++++E l+++++ lG++ W+ Ia++++ gRt++++k++w+ Thhalv10021042m 67 RGSFSPQEAALIIELHSILGNR-WAQIAKHLP-GRTDNEVKNFWN 109 899*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-27 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.788 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.2E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.8E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.01E-13 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.209 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-14 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.58E-11 | 69 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MGHHSCCNKQ KVKRGLWSPE EDEKLINYIN TYGHGCWSSV PKHAGLQRCG KSCRLRWINY 60 LRPDLKRGSF SPQEAALIIE LHSILGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLMSHH 120 HHHHHGHHHH LHISSMANLL TSLPYHNGFN PTIGDDEGSR FMSNIITNTN PNFITPSHIP 180 LPSPHVMTPL MFPTSREGDF KFHQDNNLYN SLDILSATPV INNHHHHDND PQWPSLPDLP 240 ASTIATFHEP LQDYDDGDKL NVFVTPYNDN GDPRSIPFVA TKLICGQVLE GKVLSSPSPT 300 SQDHGLLLPA TYNLEIPGDH HRVDSYINHM IIPSSSSSSS PISCGQYVIT * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-31 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates lignified secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence (PubMed:12753590, PubMed:17147638, PubMed:17329564). May play a role in specifying early endothecial cell development by regulating a number of genes linked to secondary thickening such as NST1 and NST2. Acts upstream of the lignin biosynthesis pathway (PubMed:17329564). {ECO:0000269|PubMed:12753590, ECO:0000269|PubMed:17147638, ECO:0000269|PubMed:17329564}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10021042m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by auxin. {ECO:0000269|PubMed:23410518}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY519588 | 0.0 | AY519588.1 Arabidopsis thaliana MYB transcription factor (At3g13890) mRNA, complete cds. | |||
GenBank | DQ446661 | 0.0 | DQ446661.1 Arabidopsis thaliana clone pENTR221-At3g13890 myb family transcription factor (At3g13890) mRNA, complete cds. | |||
GenBank | DQ653083 | 0.0 | DQ653083.1 Arabidopsis thaliana clone 0000019124_0000013170 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006407153.1 | 0.0 | transcription factor MYB26 | ||||
Swissprot | Q9SPG3 | 0.0 | MYB26_ARATH; Transcription factor MYB26 | ||||
TrEMBL | V4NPY3 | 0.0 | V4NPY3_EUTSA; Uncharacterized protein | ||||
STRING | XP_006407153.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12803 | 19 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13890.2 | 1e-177 | myb domain protein 26 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10021042m |
Entrez Gene | 18024143 |
Publications ? help Back to Top | |||
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