PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10021038m | ||||||||
Common Name | EUTSA_v10021021mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | TCP | ||||||||
Protein Properties | Length: 352aa MW: 39097.1 Da PI: 6.898 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 104.7 | 1.5e-32 | 90 | 207 | 2 | 119 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg..... 88 g+kdrhsk++T +g+RdRRvRls+++a++++dLq++LG+d++sk+++WLl +ak++i+el+ ++ s+++++ ++++s + ++ + Thhalv10021038m 90 FGGKDRHSKVSTLRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWLLDAAKEEIDELPPLPVSPENFSlfNHHQSFLNLGQRPGQdptql 183 689******************************************************************9997766666666664433344455 PP TCP 89 ......kaaksaakskksqksaasalnlakesrakar 119 + s++++ n ++e+++k+r Thhalv10021038m 184 gfkingE-------------STTTTTNSSREENNKER 207 5555431.............22222333333333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.6E-29 | 92 | 206 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 30.122 | 92 | 150 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0009507 | Cellular Component | chloroplast |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MLIRSSDPVN SIMNIVHWKY LNDDVSGGTT KRREGEGEGE EDADETTVLV ATSGKTVNTK 60 PPTLISSSTS SSSSWMKSKD PRIVRVSRAF GGKDRHSKVS TLRGLRDRRV RLSVPTAIQL 120 YDLQERLGVD QPSKAVDWLL DAAKEEIDEL PPLPVSPENF SLFNHHQSFL NLGQRPGQDP 180 TQLGFKINGE STTTTTNSSR EENNKERGEN DVVFTNNHHI GSYGTYHNME HHHHQHSIFQ 240 ADYHNHQHQL HSLVPFPSQI LVCPMTTTTT IQSLFPSSSS ADSETMETTD PRHMVSHFQM 300 PLMGSSSSST SQNISTLYSL LHGSTSSNNG NNRMSSVQLN RTSRGSEHHP M* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-19 | 97 | 151 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 2e-19 | 97 | 151 | 1 | 55 | Putative transcription factor PCF6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Binds to the 3'-ACC-5' repeats in the light-responsive promoter (LRP) of psbD, and activates its transcription. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:11161017, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00326 | DAP | Transfer from AT3G02150 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10021038m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB014465 | 0.0 | AB014465.1 Arabidopsis thaliana mRNA for TFPD, complete cds. | |||
GenBank | ATAC009755 | 0.0 | AC009755.7 Arabidopsis thaliana chromosome III BAC F14P3 genomic sequence, complete sequence. | |||
GenBank | ATAC011664 | 0.0 | AC011664.10 Arabidopsis thaliana chromosome III BAC F1C9 genomic sequence, complete sequence. | |||
GenBank | BT001982 | 0.0 | BT001982.1 Arabidopsis thaliana expressed protein (At3g02150) mRNA, complete cds. | |||
GenBank | BT008839 | 0.0 | BT008839.1 Arabidopsis thaliana At3g02156 mRNA, complete cds. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006408443.1 | 0.0 | transcription factor TCP13 isoform X1 | ||||
Swissprot | Q9S7W5 | 1e-172 | TCP13_ARATH; Transcription factor TCP13 | ||||
TrEMBL | V4LH85 | 0.0 | V4LH85_EUTSA; Uncharacterized protein | ||||
STRING | XP_006408443.1 | 0.0 | (Eutrema salsugineum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.2 | 1e-142 | plastid transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10021038m |
Entrez Gene | 18023556 |
Publications ? help Back to Top | |||
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