PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10020967m
Common NameEUTSA_v10020967mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family CO-like
Protein Properties Length: 372aa    MW: 40521.6 Da    PI: 5.9278
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10020967mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.91.6e-06444539
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                     +C+ ++e++   +C+++  +lC +C  + H+       H++
  Thhalv10020967m  4 MCDFCGEQRSMVYCRSDAACLCLSCDRSVHSAnalskrHSR 44
                     6*****************************65677777765 PP
2zf-B_box23.51.1e-074693437
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg..............H 37
                      +C++++ ++++  C + ++ lC++C  ++H++              H
  Thhalv10020967m 46 LVCERCNAQPATVRCVEERVSLCQNCDWSGHNNnnnssssssspsqnH 93
                     68*****************************87555555555555555 PP
3CCT60.46.1e-21314357144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      R++a++RYkeK+k RkF+K++rY+sRKa+A+ R RvKGrFvk+ 
  Thhalv10020967m 314 RNNAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVKAG 357
                      99***************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.798147IPR000315B-box-type zinc finger
CDDcd000216.63E-8447No hitNo description
SMARTSM003361.1E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501198.7314377IPR000315B-box-type zinc finger
CDDcd000211.48E-54776No hitNo description
SMARTSM003360.544898IPR000315B-box-type zinc finger
PfamPF062031.0E-15314356IPR010402CCT domain
PROSITE profilePS5101715.338314356IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLVCER CNAQPATVRC  60
VEERVSLCQN CDWSGHNNNN NSSSSSSSPS QNHKKQTISC YSGCPSSSEL ASIWSFCLDL  120
AGQSVCEQEM GMMNIDDDGQ TNQNCNEDKK DVVVGSSSKP ETSSAAQGNS SFTKDVGVCE  180
DDFYGNLGMD EVDLALENYE ELFGTAFNPS GELFGQSGID SLFQKHQAAP PDGGNSVQPA  240
GSNDSFMSSK TEPIICFTSK PAHSNISFSG VTGESSAGDF QECGASSSMQ LSGEPPWYPQ  300
TSQDNNACSH SVTRNNAVMR YKEKKKARKF DKRVRYASRK ARADVRRRVK GRFVKAGEAY  360
DYDPLTPTRS Y*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10020967m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3169340.0AK316934.1 Arabidopsis thaliana AT3G07650 mRNA, complete cds, clone: RAFL14-22-K23.
GenBankBT0294900.0BT029490.1 Arabidopsis thaliana At3g07650 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407812.10.0zinc finger protein CONSTANS-LIKE 9
SwissprotQ9SSE50.0COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLV4LFJ10.0V4LFJ1_EUTSA; Uncharacterized protein
STRINGXP_006407811.10.0(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.40.0CONSTANS-like 9