PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10020945m
Common NameEUTSA_v10020945mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 378aa    MW: 41979.4 Da    PI: 4.7357
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10020945mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.78.1e-20124173255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+G+r+++ +g+W+AeIrdp++     r +lg+f+taeeAa+a++aa+++++g
  Thhalv10020945m 124 QYRGIRQRP-WGKWAAEIRDPRK---GSREWLGTFDTAEEAARAYDAAARRIRG 173
                      69*******.**********954...39************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.5E-32124182IPR001471AP2/ERF domain
SMARTSM003806.6E-37124187IPR001471AP2/ERF domain
PROSITE profilePS5103224.54124181IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-22124182IPR016177DNA-binding domain
CDDcd000183.99E-17124182No hitNo description
PRINTSPR003673.2E-11125136IPR001471AP2/ERF domain
PfamPF008479.8E-13125173IPR001471AP2/ERF domain
PRINTSPR003673.2E-11147163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001666Biological Processresponse to hypoxia
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MCGGAIISDF IPPPSSRRVT SEFLWPDLKN KGKASKKRSK KRSDFFDLDD EFEADFQGFK  60
DDSSFDCEDD FDVDDDVMPF VFTAATKPVA SAAAFASAGS VSGKKTVECD VQADKSAKRK  120
RKNQYRGIRQ RPWGKWAAEI RDPRKGSREW LGTFDTAEEA ARAYDAAARR IRGTKAKVNF  180
PEEKKIPSVS QKRPAAKTSN LKKPVAKPTQ SPAFVQPPTH LSQYCNSSFD NMGQNSFGDM  240
SFMEEKPQMY NNNQFGLSNS FDAGGNNGYQ YFSSDQGSNS FDCSEFGWSD HGPKTPEISS  300
MLVNNNQAPF TDETNAAKKL KTNSDDLMVY LDNALWESPL EVEDMLGADA GPVTQEEENP  360
MDLWSLDEIN SMLEGVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-211231881379Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in carotenoid biosynthesis regulation. Binds to the 5'-ATCTA-3' element present in the promoter of phytoene synthase (PSY) and phytoene desaturase (PDS). Involved in ethylene response and resistance to necrotrophic pathogens. Acts as a downstream regulator in the ethylene signaling pathway. Partially redundant with RAP2-12. {ECO:0000269|PubMed:17873090, ECO:0000269|PubMed:20357136, ECO:0000269|PubMed:22530619}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10020945m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by darkness, ethylene and Botrytis cinerea. {ECO:0000269|PubMed:20357136, ECO:0000269|PubMed:22530619}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3525200.0AK352520.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-01-B04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407105.10.0ethylene-responsive transcription factor RAP2-2
SwissprotQ9LUM40.0RAP22_ARATH; Ethylene-responsive transcription factor RAP2-2
TrEMBLE4MVH30.0E4MVH3_EUTHA; mRNA, clone: RTFL01-01-B04
TrEMBLV4M8790.0V4M879_EUTSA; Uncharacterized protein
STRINGXP_006407104.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.31e-166related to AP2 2
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Bui LT,Giuntoli B,Kosmacz M,Parlanti S,Licausi F
    Constitutively expressed ERF-VII transcription factors redundantly activate the core anaerobic response in Arabidopsis thaliana.
    Plant Sci., 2015. 236: p. 37-43
    [PMID:26025519]
  3. Gasch P, et al.
    Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis.
    Plant Cell, 2016. 28(1): p. 160-80
    [PMID:26668304]
  4. Yao Y, et al.
    ETHYLENE RESPONSE FACTOR 74 (ERF74) plays an essential role in controlling a respiratory burst oxidase homolog D (RbohD)-dependent mechanism in response to different stresses in Arabidopsis.
    New Phytol., 2017. 213(4): p. 1667-1681
    [PMID:28164334]
  5. Giuntoli B, et al.
    Age-dependent regulation of ERF-VII transcription factor activity in Arabidopsis thaliana.
    Plant Cell Environ., 2017. 40(10): p. 2333-2346
    [PMID:28741696]