PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10020829m
Common NameEUTSA_v10020829mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HSF
Protein Properties Length: 412aa    MW: 47056 Da    PI: 4.564
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10020829mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.62.6e-35611532103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y+++ed+++++++sws+ +nsfvv+d++ f+ ++Lp++Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll+
  Thhalv10020829m  61 FLTKTYDLVEDSRTNHVVSWSQASNSFVVWDPQAFSMTLLPRFFKHNNFSSFVRQLNTYGFRKVNPDR---------WEFANEGFLRGQKHLLK 145
                      9****************************************************************999.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +i+r+k++
  Thhalv10020829m 146 TIRRRKTS 153
                      *****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467855.58E-3556150IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.7E-3857150IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.7E-5857150IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.7E-3161150IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-186184IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-1899111IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340100124IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-18112124IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MDPSYRFIKE EFPTGFNDSP SPPSSSTPSY FYSTSMAPND PTTLSSPQPI EGLHESGPPP  60
FLTKTYDLVE DSRTNHVVSW SQASNSFVVW DPQAFSMTLL PRFFKHNNFS SFVRQLNTYG  120
FRKVNPDRWE FANEGFLRGQ KHLLKTIRRR KTSNNNKMQQ PQSSSQQQSL DNCCIEVGRY  180
GLDGEMDSLK RDKQVLMTEL VKLRQQQQNT KMYLTLIEEK LKKTESKQQQ MMSFLARAMQ  240
NPEFIQQLVD QKEKRKEIED AISKKRQRPI DQGTRNVVNV EDYDDDGGGG GGSYGRYMND  300
AGSSSAFVDI KQETYGVISQ FEMSELDRLA MHIQGLGAQS DQSNKEDILD LEKGNEVEQQ  360
QDGFQKENND IYGEGFWEDL LNEGQNFDFE GDEENVDVLI EQLGYLGSDS Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-245615312123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10020829m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0459740.0AY045974.1 Arabidopsis thaliana putative heat shock protein (At3g22830) mRNA, complete cds.
GenBankAY0793740.0AY079374.1 Arabidopsis thaliana putative heat shock protein (At3g22830) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406124.10.0heat stress transcription factor A-6b
SwissprotQ9LUH80.0HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLV4LYI10.0V4LYI1_EUTSA; Uncharacterized protein
STRINGXP_006406124.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.10.0heat shock transcription factor A6B