PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10020786m | ||||||||
Common Name | EUTSA_v10020786mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | TCP | ||||||||
Protein Properties | Length: 429aa MW: 46604.1 Da PI: 7.0476 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 120.4 | 2.2e-37 | 49 | 158 | 2 | 110 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........................ssssa 70 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LGfd++sk+++WL+++ak++i+el+++ + +s+ Thhalv10020786m 49 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKAKTSIDELAELppwnpadairnaaanakprrtavktQ-ISP 141 79**************************************************************77666655555544444444444321.111 PP TCP 71 seceaesssssasnsssgkaaksaakskksqksaasalnl 110 +s ++++++q++++ l++ Thhalv10020786m 142 ---------------------SSPPPPQQQQQQQH--LQF 158 .....................11112222222222..332 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.1E-32 | 49 | 162 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.016 | 51 | 109 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 429 aa Download sequence Send to blast |
MADDDEAHHF LHPPAPPPSS MRHRATSDAA NGGCGEIVEV QGGHIVRSTG RKDRHSKVCT 60 AKGPRDRRVR LSAHTAIQFY DVQDRLGFDR PSKAVDWLIK KAKTSIDELA ELPPWNPADA 120 IRNAAANAKP RRTAVKTQIS PSSPPPPQQQ QQQQHLQFGG VGFDGGAEHQ SNNDNESSFL 180 PPSMDSDSIA DTIKSFFPVV GSSTEAPPNQ LMHSYHHHNH PPDLLSRSNS QSQDLRLSLQ 240 SFPDGPPSLL HHHSASASVA EPVMFYGQSN PFETTTGGWE QQSSEFGRIQ RLVAWNSGGA 300 NDTGNGGGGG GFLFAPPPPS ATSFQPVFGQ SQLFSQRGPL QSSYTPMIRA WFDPHHHQSI 360 STDDLNHHHH HHHHIPPPVH QSAIPGIGFA SGEFSSGFRV PARFQGQDEE HHDGLTNKPS 420 SASSISRH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-20 | 56 | 109 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 3e-20 | 56 | 109 | 1 | 54 | Putative transcription factor PCF6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00009 | PBM | Transfer from 929286 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10020786m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006407022.1 | 0.0 | transcription factor TCP4 | ||||
Swissprot | Q8LPR5 | 0.0 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | V4LDG9 | 0.0 | V4LDG9_EUTSA; Uncharacterized protein | ||||
STRING | XP_006407022.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2408 | 27 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 1e-172 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10020786m |
Entrez Gene | 18023590 |