PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10020729m

Common Name

EUTSA_v10020729mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

bHLH

Protein Properties

Length: 448aa MW: 48681.4 Da PI: 8.0209

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10020729m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.5	2.8e-09	276	323	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Thhalv10020729m 276 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 323 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.62E-10	270	327	No hit	No description
SuperFamily	SSF47459	5.37E-17	270	341	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.663	272	322	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.3E-17	272	340	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-6	276	323	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-10	278	328	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
MENNLFMNGG ISYPSEMTSL SSSSSAMLNW ASMATQPVEP SLSSILSRDC FFWEKSTEQS 60 IFDSALSSLV SSPTPSNSNF SGGGGGNFVI SELIGKLGNI GEIYGTPAGN GNNSGSCYAA 120 PMSSPPPRTR TPTPLAVFPG DPGFAERAAK FSCFGSRSFN GRTNSPFPIH NGTVAATNGN 180 LPRVASTPAL KPLTSKIPAG ESSGEFSRKR KAKSKENTPS TASPSSNLSK EVKERDDSDT 240 KRSRKSEEKN EEKTKSLDPY KDFIHVRARR GQATDSHSLA ERVRREKISE RMKLLQDLVP 300 GCNKVTGKAL MLDEIINYVQ SLQRQVEFLS MKLSSVNTRL DFNMEALVSK DIFPSSNILM 360 QHHQQVLQLD SSSETLLADH HNQTLQLSPT ISSNNIIDPL GASETRSFIS QLPTVTHFTE 420 SISQYSTFSE DDLHSVIHKG FAQKPDP*

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

MENNLFMNGG ISYPSEMTSL SSSSSAMLNW ASMATQPVEP SLSSILSRDC FFWEKSTEQS  60
IFDSALSSLV SSPTPSNSNF SGGGGGNFVI SELIGKLGNI GEIYGTPAGN GNNSGSCYAA  120
PMSSPPPRTR TPTPLAVFPG DPGFAERAAK FSCFGSRSFN GRTNSPFPIH NGTVAATNGN  180
LPRVASTPAL KPLTSKIPAG ESSGEFSRKR KAKSKENTPS TASPSSNLSK EVKERDDSDT  240
KRSRKSEEKN EEKTKSLDPY KDFIHVRARR GQATDSHSLA ERVRREKISE RMKLLQDLVP  300
GCNKVTGKAL MLDEIINYVQ SLQRQVEFLS MKLSSVNTRL DFNMEALVSK DIFPSSNILM  360
QHHQQVLQLD SSSETLLADH HNQTLQLSPT ISSNNIIDPL GASETRSFIS QLPTVTHFTE  420
SISQYSTFSE DDLHSVIHKG FAQKPDP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10020729m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006407846.1	0.0	transcription factor bHLH62
Swissprot	Q9SRT2	0.0	BH062_ARATH; Transcription factor bHLH62
TrEMBL	V4LZK5	0.0	V4LZK5_EUTSA; Uncharacterized protein
STRING	XP_006407846.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2332	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	0.0	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thhalv10020729m
Entrez Gene	18024625

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]