PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10020494m
Common NameEUTSA_v10020494mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 531aa    MW: 58164.2 Da    PI: 7.7584
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10020494mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.81.3e-11184208226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      +++ C ++++t tCk+G++CkF H+
  Thhalv10020494m 184 GEKDCTHYMQTRTCKFGESCKFDHP 208
                      7889********************8 PP
2zf-CCCH331e-10234260127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++ C+++ +t  CkyG rCkF+H++
  Thhalv10020494m 234 PGEPDCPYYIKTQRCKYGLRCKFNHPR 260
                      5789*********************96 PP
3zf-CCCH38.51.9e-12279303327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C f+++tG Ck+G +CkF+H++
  Thhalv10020494m 279 EPPCTFYMKTGKCKFGLTCKFHHPK 303
                      79*********************96 PP
4zf-CCCH38.61.7e-12349375127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++ C+f+++tG CkyG++C+++H++
  Thhalv10020494m 349 PGEVDCPFYLKTGSCKYGATCRYNHPE 375
                      57899********************96 PP
5zf-CCCH40.25.8e-13430454226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ++++C+++++tG+Ck+G+rC+F+H+
  Thhalv10020494m 430 GQSECDYYMKTGECKFGERCRFHHP 454
                      7899********************8 PP
6zf-CCCH40.25.6e-13486507526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+++++tGtCkyG++CkF H+
  Thhalv10020494m 486 NCPYYMKTGTCKYGATCKFDHP 507
                      6********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.002182209IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.817182210IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5184209IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-9184208IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-4188207IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.76233261IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-4233260IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-7235260IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-5238260IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-4239259IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-6276303IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.601276304IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-10279303IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-5280304IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-5281302IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.554348376IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-7348375IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-10350375IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5352376IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4354375IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-6428455IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.047428456IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-7428459IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-10430454IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-6434456IPR000571Zinc finger, CCCH-type
SMARTSM003569.4E-6481508IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.835481509IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-5486508IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-10486507IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-5487506IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MAHRHQLFSY ALQPSYAAAS AVSPAPPAPQ PQPQLQPQPK IGLSSLYGSS AADHYFPDTN  60
FRFLPRDGSE ALSNYSSSLG TLTSSSAMYH HLPNTTTTHL AYPQLIQQHQ EAWPPGVEVP  120
VAASAVEPLP PGVKRTSEAL YYPTLLGAHN TIGQTEAWYT TDYFTKRLKL ESTSHLPVYP  180
QRPGEKDCTH YMQTRTCKFG ESCKFDHPIW VPEGGIPDWK EAPLVPNDDY PERPGEPDCP  240
YYIKTQRCKY GLRCKFNHPR AAAAVSVENQ DSLPERPSEP PCTFYMKTGK CKFGLTCKFH  300
HPKDIQLPSS SQEMGTSEAL TSDPDATNNP HVTFTAALYH NSKGLPVRPG EVDCPFYLKT  360
GSCKYGATCR YNHPERTAFT PQAAGINYPL VSSTAASVNL GLVNSAASLY QTLAQPTLGA  420
LSAIYPQRPG QSECDYYMKT GECKFGERCR FHHPADRLNA TTKQASQQPN VKLSLAGYPR  480
REGALNCPYY MKTGTCKYGA TCKFDHPAPG EVMAKTSSEA DAGGGADTNQ *
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10020494m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2291450.0AK229145.1 Arabidopsis thaliana mRNA for floral homeotic protein HUA1, partial cds, clone: RAFL16-42-O16.
GenBankAY0243570.0AY024357.1 Arabidopsis thaliana floral homeotic protein HUA1 (HUA1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407309.10.0zinc finger CCCH domain-containing protein 37 isoform X2
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLV4M1Q90.0V4M1Q9_EUTSA; Uncharacterized protein
STRINGXP_006407309.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97612836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)