PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10020373m

Common Name

EUTSA_v10020373mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

CPP

Protein Properties

Length: 582aa MW: 63902.9 Da PI: 8.1636

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10020373m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	50.8	3.4e-16	300	338	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C e C+C dC+Nk Thhalv10020373m 300 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCIDCFNKP 338 689**********************************96 PP
2	TCR	52.4	1.1e-16	385	423	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC+++g+ Cs +C+Ce+CkN Thhalv10020373m 385 RHKRGCNCKKSNCLKKYCECYQSGVGCSINCRCEGCKNA 423 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	2.4E-19	299	340	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	37.529	300	425	IPR005172	CRC domain
Pfam	PF03638	5.4E-12	302	337	IPR005172	CRC domain
SMART	SM01114	4.2E-17	385	426	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	5.3E-12	387	423	IPR005172	CRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 582 aa Download sequence Send to blast
MDTPPKTVTQ IGTPISKLKV ENSPVFNFIN SLSPIKPVKS IPIAQTFGSL SFSSPPSVFT 60 SPHAASHKGS RFKSHNNSSK DESASNAELA SIGEEVEVEE ASIEIEPSTQ IIKNDCITAT 120 TPKVVNDGSC KDGEMDLQKM CDHNVKPKSK TPDWGSLFSD SELLIYGSPN DSEAYRCFLQ 180 RQSNSETRLS GGKKLTLEPV SNSNEPESSD ALHRGVRRRC LDFEIPGKNK QTSGESSSRC 240 VVRNIGLHLN AIAMSSKDSN VANEYSFSGN IKSSALVELN QSSPKKKRRK SEQAGDGESS 300 CKRCNCKKSK CLKLYCECFA AGVYCIEPCS CIDCFNKPIH EDTVLATRKQ IESRNPLAFA 360 PKVIRNSDSI MEVGDDATKT PASARHKRGC NCKKSNCLKK YCECYQSGVG CSINCRCEGC 420 KNAFGRKDGS SFVAMDIEHD DETAKPQHHA ELFNSVPIPP STPMPLRQPL AQLPISSNNV 480 LLTQQSQHFH GASLYKYQSF WKQDMSLLSH SRIETITEER AEDTENLIQS PITTNINAVS 540 PNSKRVSVSH LDSSESSPWR RNSGRKLLLS IPTFPSLTPH H*

Sequence ? help Back to Top

Protein Sequence Length: 582 aa Download sequence Send to blast

MDTPPKTVTQ IGTPISKLKV ENSPVFNFIN SLSPIKPVKS IPIAQTFGSL SFSSPPSVFT  60
SPHAASHKGS RFKSHNNSSK DESASNAELA SIGEEVEVEE ASIEIEPSTQ IIKNDCITAT  120
TPKVVNDGSC KDGEMDLQKM CDHNVKPKSK TPDWGSLFSD SELLIYGSPN DSEAYRCFLQ  180
RQSNSETRLS GGKKLTLEPV SNSNEPESSD ALHRGVRRRC LDFEIPGKNK QTSGESSSRC  240
VVRNIGLHLN AIAMSSKDSN VANEYSFSGN IKSSALVELN QSSPKKKRRK SEQAGDGESS  300
CKRCNCKKSK CLKLYCECFA AGVYCIEPCS CIDCFNKPIH EDTVLATRKQ IESRNPLAFA  360
PKVIRNSDSI MEVGDDATKT PASARHKRGC NCKKSNCLKK YCECYQSGVG CSINCRCEGC  420
KNAFGRKDGS SFVAMDIEHD DETAKPQHHA ELFNSVPIPP STPMPLRQPL AQLPISSNNV  480
LLTQQSQHFH GASLYKYQSF WKQDMSLLSH SRIETITEER AEDTENLIQS PITTNINAVS  540
PNSKRVSVSH LDSSESSPWR RNSGRKLLLS IPTFPSLTPH H*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	4e-17	302	422	12	120	Protein lin-54 homolog
5fd3_B	4e-17	302	422	12	120	Protein lin-54 homolog
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	284	288	KKKRR
2	284	289	KKKRRK
3	285	289	KKRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00044	PBM	Transfer from AT3G22760	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10020373m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF205142	1e-173	AF205142.1 Arabidopsis thaliana CXC domain containing TSO1-like protein 1 (SOL1) mRNA, complete cds.
GenBank	AY099653	1e-173	AY099653.1 Arabidopsis thaliana unknown protein (At3g22760) mRNA, complete cds.
GenBank	AY128837	1e-173	AY128837.1 Arabidopsis thaliana unknown protein (At3g22760) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024015205.1	0.0	protein tesmin/TSO1-like CXC 3
Swissprot	Q8L548	0.0	TCX3_ARATH; Protein tesmin/TSO1-like CXC 3
TrEMBL	V4M5N2	0.0	V4M5N2_EUTSA; Uncharacterized protein
STRING	XP_006406130.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1467	28	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22760.1	0.0	Tesmin/TSO1-like CXC domain-containing protein

Link Out ? help Back to Top
Phytozome	Thhalv10020373m
Entrez Gene	18023276

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]