PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10019780m | ||||||||
Common Name | EUTSA_v10019780mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 108aa MW: 12841.7 Da PI: 5.0837 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 26.4 | 9e-09 | 3 | 29 | 25 | 50 |
HHHHHHHT-EEEEEEE-TTSEE.EEEE CS SRF-TF 25 eELSvLCdaevaviifsstgkl.yeys 50 +ELS+ Cd++v++++++ +g+l +++ Thhalv10019780m 3 YELSTQCDIQVCILYYGCDGELiNTWP 29 8********************834665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00319 | 1.8E-4 | 3 | 24 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 108 aa Download sequence Send to blast |
ITYELSTQCD IQVCILYYGC DGELINTWPE DQYKRRDLSI KLHKFSHKVL EIEHSLDTRL 60 RMFQDKLQVL LQTEPDQSRF SIFLYNHDNN FSQLVDPIMQ TQNLLLF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10019780m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024006833.1 | 6e-25 | agamous-like MADS-box protein AGL93 | ||||
Swissprot | Q7X9N2 | 3e-18 | AGL53_ARATH; Agamous-like MADS-box protein AGL53 | ||||
TrEMBL | V4MBP8 | 5e-73 | V4MBP8_EUTSA; Uncharacterized protein (Fragment) | ||||
STRING | XP_006391330.1 | 9e-74 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5753 | 9 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G27090.2 | 4e-22 | AGAMOUS-like 54 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10019780m |
Entrez Gene | 18008735 |
Publications ? help Back to Top | |||
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