PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10019764m | ||||||||
Common Name | EUTSA_v10019764mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | LBD | ||||||||
Protein Properties | Length: 190aa MW: 21428.5 Da PI: 8.4503 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 116.4 | 1.8e-36 | 16 | 115 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCaaCk++r+kC+k+C lapyfp+++ k+f n+h+lFG sn++k+lk ++e+er++am+ l+ +A+ara dPv G+++++++l+++++ ++el Thhalv10019764m 16 ACAACKFQRKKCTKNCLLAPYFPQDRYKQFLNAHRLFGISNITKMLKGIQESERDIAMQNLILHANARALDPVGGVYKIMSDLRRRISYYETEL 109 7********************************************************************************************* PP DUF260 95 allkee 100 +++++e Thhalv10019764m 110 NSIRQE 115 *99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 17 | No hit | No description |
PROSITE profile | PS50891 | 24.868 | 15 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.0E-34 | 16 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MSLSKLHGGS SSSATACAAC KFQRKKCTKN CLLAPYFPQD RYKQFLNAHR LFGISNITKM 60 LKGIQESERD IAMQNLILHA NARALDPVGG VYKIMSDLRR RISYYETELN SIRQEVALYR 120 SLAHPQQMPM QSQSQELSFG CYSYGDLLEQ GEEYVNADGY ETSKVKLEKE VISNPDQFLS 180 QILMPSQVI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-24 | 10 | 119 | 5 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-24 | 10 | 119 | 5 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10019764m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006390606.1 | 1e-140 | LOB domain-containing protein 7 | ||||
Swissprot | Q9SSM9 | 3e-67 | LBD7_ARATH; LOB domain-containing protein 7 | ||||
TrEMBL | V4KDM2 | 1e-138 | V4KDM2_EUTSA; Uncharacterized protein | ||||
STRING | XP_006390606.1 | 1e-139 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15466 | 14 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72980.1 | 5e-58 | LOB domain-containing protein 7 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10019764m |
Entrez Gene | 18009437 |