PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10019722m | ||||||||
Common Name | EUTSA_v10019722mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | ERF | ||||||||
Protein Properties | Length: 322aa MW: 35322.5 Da PI: 4.583 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.9 | 1.4e-14 | 106 | 153 | 2 | 53 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 + GVr++k +g+W+AeIr+p + r +lg+f t+eeA++a+ +k++ Thhalv10019722m 106 KPVGVRQRK-WGKWAAEIRHPI----TkIRTWLGTFETEEEAHQAYKDKKKEY 153 789*****9.**********72....36******************9999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.68E-19 | 105 | 146 | No hit | No description |
SMART | SM00380 | 2.6E-10 | 106 | 155 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-8 | 106 | 154 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.779 | 106 | 163 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-6 | 107 | 118 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.27E-14 | 108 | 153 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.8E-18 | 109 | 148 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-6 | 129 | 145 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MVELRKQQSL SGTKKPKRNN SLLSHPQETQ TLRKIRIIVN DPYATDDSSS DEDEPKPRKV 60 KRIVREINFP SLESAPSVSS SQDSTKTIVK KAAAALAASR NRLTKKPVGV RQRKWGKWAA 120 EIRHPITKIR TWLGTFETEE EAHQAYKDKK KEYDALVASV SVSENAKPAA SSSETSQCSR 180 SSPIAPLEQD TSASALTCVN VKEEVKIKIT PDDATVGVDS SKEMLFDFNF ADLQIPDLGF 240 FADDGPMATV GDFDCFLNDD QLDGLGLLDD IDGFEDSGPS ELPDFDFGDV ELELGDDSSF 300 AFLDQIQPLN IPSCPMKSFA A* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00217 | DAP | Transfer from AT1G68550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10019722m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006391127.1 | 0.0 | ethylene-responsive transcription factor ERF118 | ||||
Swissprot | Q9CA27 | 1e-122 | EF118_ARATH; Ethylene-responsive transcription factor ERF118 | ||||
TrEMBL | V4KM74 | 0.0 | V4KM74_EUTSA; Uncharacterized protein | ||||
STRING | XP_006391127.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2537 | 26 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68550.2 | 7e-91 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10019722m |
Entrez Gene | 18009243 |
Publications ? help Back to Top | |||
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