PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10019659m
Common NameEUTSA_v10019659mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 186aa    MW: 20395.6 Da    PI: 5.6521
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10019659mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.7e-172271255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      y+GVr +k +g+Wv+eIr+p +   + r++lg+f t+e+Aa a++ a+  ++g
  Thhalv10019659m 22 AYRGVRKRK-WGKWVSEIREPGT---KNRIWLGSFETPEMAATAYDVAAYHFRG 71
                     69****999.**********833...59*********************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.55E-222180IPR016177DNA-binding domain
CDDcd000181.84E-312181No hitNo description
PfamPF008479.0E-112271IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-312280IPR001471AP2/ERF domain
PROSITE profilePS5103223.5652279IPR001471AP2/ERF domain
SMARTSM003805.6E-372285IPR001471AP2/ERF domain
PRINTSPR003671.1E-122334IPR001471AP2/ERF domain
PRINTSPR003671.1E-126181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MAGLSNSGSS ARNDGQAGIP SAYRGVRKRK WGKWVSEIRE PGTKNRIWLG SFETPEMAAT  60
AYDVAAYHFR GREARLNFPE LASNLPRPAD SSSDSIRMAA HEAVLCLRTE PVESDMQVDT  120
SSSSSNVGPT MVRLSPREIQ AINESTLGSP TMLMHSTYDS MGFANDVGMN VWDTYHYQSD  180
SLWDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-162379663ATERF1
3gcc_A2e-162379663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10019659m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390770.11e-136ethylene-responsive transcription factor ERF021
SwissprotQ9C9I21e-108ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLV4MA731e-135V4MA73_EUTSA; Uncharacterized protein
STRINGXP_006390770.11e-136(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.11e-108ERF family protein