PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10019652m | ||||||||
Common Name | EUTSA_v10019652mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | ERF | ||||||||
Protein Properties | Length: 200aa MW: 22269.6 Da PI: 4.393 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.4 | 2e-19 | 19 | 69 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+ykGVr +k +g+Wv+eIr p + + r++lg+++t+e+Aa+a +aa +l+g Thhalv10019652m 19 SKYKGVRKRK-WGKWVSEIRLP---N-CrDRIWLGSYDTPEKAARAFDAAQFCLRG 69 89*****999.**********8...3.45*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.2E-12 | 19 | 69 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.61E-29 | 19 | 79 | No hit | No description |
SuperFamily | SSF54171 | 3.47E-20 | 19 | 78 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.628 | 20 | 77 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.5E-32 | 20 | 83 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-28 | 20 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-9 | 21 | 32 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-9 | 43 | 59 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0002213 | Biological Process | defense response to insect | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MAKKAMKEEE EKRNSSMQSK YKGVRKRKWG KWVSEIRLPN CRDRIWLGSY DTPEKAARAF 60 DAAQFCLRGG NAGFNFPDHP PSISGGRSLT PSEIREAAAR YANAQEDTIN RGEEPGLFEI 120 RPESPSTSAS EVASSSVTTL DCDLSSFFDM PPADFGIFPG FDDFSDDFSA FPGDQFTEIL 180 PIEDYGVENF DGSLFLWDF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-14 | 18 | 85 | 12 | 80 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 21 | 27 | KGVRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00601 | PBM | Transfer from AT1G74930 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10019652m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006390369.1 | 1e-145 | ethylene-responsive transcription factor ERF018 | ||||
Swissprot | Q9S7L5 | 3e-89 | ERF18_ARATH; Ethylene-responsive transcription factor ERF018 | ||||
TrEMBL | V4JR05 | 1e-144 | V4JR05_EUTSA; Uncharacterized protein | ||||
STRING | XP_006390369.1 | 1e-144 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1614 | 28 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74930.1 | 2e-63 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10019652m |
Entrez Gene | 18008712 |
Publications ? help Back to Top | |||
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