PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10019637m

Common Name

EUTSA_v10019637mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

bHLH

Protein Properties

Length: 163aa MW: 18393.3 Da PI: 4.7182

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10019637m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.9	0.0002	67	93	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 + +E++RR+ i+++ ++L l P + Thhalv10019637m 67 KRTLMEKKRRQIIKDKVDRLLALTPYS 93 56789*****************99985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.02E-4	63	103	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MEDTEGELSK ITDILSTFSS EDQNELNPLQ EIFGAHSSSS TLVSPEPEDS ENDDQRDTSD 60 DHYNKSKRTL MEKKRRQIIK DKVDRLLALT PYSEKVNILH TYIGESNTIS PFYAAQAPCM 120 APPYTTPWCY YVPGIPMMPH HNIPFNPQSH QAHDTAPPDK TQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10019637m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006391161.1	1e-119	transcription factor bHLH109
TrEMBL	V4KF46	1e-117	V4KF46_EUTSA; Uncharacterized protein
STRING	XP_006391161.1	1e-118	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15032	14	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68240.1	3e-30	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thhalv10019637m
Entrez Gene	18009058