PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10019518m | ||||||||
Common Name | EUTSA_v10019518mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | B3 | ||||||||
Protein Properties | Length: 125aa MW: 14198.3 Da PI: 5.1616 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33.2 | 9.3e-11 | 22 | 112 | 2 | 85 |
EEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld 85 +k+l+ dv+++g l lp++ +e++ +++++ + ++++ +++ v+l ++ks+r y+l++GW vk ng +++D + + + Thhalv10019518m 22 KKTLSDTDVSQQGKLNLPRQDFENFiipemagDIIQNLGNGVKVKVlIYEEEYIVTL--KRKSNRsYMLSAGWPALVKTNGFQTNDLIGLCWV 112 689999****************77777766664444455555555544557888888..5555555********************9876654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.43E-13 | 18 | 120 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-13 | 19 | 117 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 3.9E-5 | 21 | 124 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.19E-13 | 21 | 121 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MAQDQELNLE LDLTPYDPRV IKKTLSDTDV SQQGKLNLPR QDFENFIIPE MAGDIIQNLG 60 NGVKVKVLIY EEEYIVTLKR KSNRSYMLSA GWPALVKTNG FQTNDLIGLC WVSSSSRFYL 120 QRII* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10019518m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024006866.1 | 5e-53 | B3 domain-containing protein At1g10455 | ||||
TrEMBL | V4KC94 | 3e-86 | V4KC94_EUTSA; Uncharacterized protein | ||||
STRING | XP_006391438.1 | 5e-87 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14946 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08985.1 | 3e-11 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10019518m |
Entrez Gene | 18008444 |