PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10019510m | ||||||||
Common Name | EUTSA_v10019510mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | ERF | ||||||||
Protein Properties | Length: 149aa MW: 16525.2 Da PI: 6.0133 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.8 | 4.1e-16 | 14 | 63 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykG+r++k +g+Wv+eIr+p + r r +lg+f tae+Aa a++ a +l+ Thhalv10019510m 14 KYKGIRRRK-WGKWVSEIRVPGT---RERLWLGSFSTAEGAAVAHDVAFYCLHR 63 8*****998.**********943...5*********************999985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 20.547 | 14 | 75 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-27 | 14 | 81 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.5E-8 | 14 | 61 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.45E-23 | 14 | 77 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.9E-24 | 14 | 76 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.42E-16 | 14 | 75 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.1E-9 | 15 | 26 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-9 | 37 | 53 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MDSRDAGETH HQVKYKGIRR RKWGKWVSEI RVPGTRERLW LGSFSTAEGA AVAHDVAFYC 60 LHRPLSLEDE AFNFPHLLSP SLASNTSPKS IQKAASDAGM AVDAGFAVNN DGRSGGGEDR 120 SSTTYREEDR ERETMSISVY DYLDDDRV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10019510m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY086697 | 1e-37 | AY086697.1 Arabidopsis thaliana clone 26867 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006390762.1 | 1e-107 | ethylene-responsive transcription factor ERF020 | ||||
Swissprot | Q9C9I8 | 3e-75 | ERF20_ARATH; Ethylene-responsive transcription factor ERF020 | ||||
TrEMBL | V4KLA3 | 1e-106 | V4KLA3_EUTSA; Uncharacterized protein | ||||
STRING | XP_006390762.1 | 1e-106 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3865 | 28 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71520.1 | 1e-70 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10019510m |
Entrez Gene | 18008879 |
Publications ? help Back to Top | |||
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