PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10019499m
Common NameEUTSA_v10019499mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family TCP
Protein Properties Length: 361aa    MW: 41057.5 Da    PI: 5.4941
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10019499mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.82.3e-39852322128
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssasec.......eaesssss 81 
                      a+kkdrhski+T++g+RdRRvRls+ +a++fFdLqd+LGfdk+skt++WLl+++ +ai el++        +     +        e+e+++  
  Thhalv10019499m  85 AVKKDRHSKIYTAQGLRDRRVRLSIGVARQFFDLQDMLGFDKASKTLDWLLNKSRKAIRELVQEkklnnddN-----DIgnnggdlEEEEDVDD 173
                      89**************************************************************66643321.....22333334233333333 PP

              TCP  82 asnsssg..............kaaksaakskksqksaasalnlak.esrakarararertre 128
                      ++    +              +    + k+ +++k+++  +n++    rak + +a+ertr+
  Thhalv10019499m 174 DDD---AnkrflygsspeyceEDVVCEVKKAEKRKKKSDSSNISSkGARAKDKGKAKERTRQ 232
                      332...13468889999999844444444444444444445555548889999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.8E-3986233IPR005333Transcription factor, TCP
PROSITE profilePS5136935.6587145IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MSSSNNDYNN CNNSGVHPLS LYLASLSGHQ GIIRNPYSHQ LTASPAKMVS AVPESLIDYM  60
AFNSNNSVNQ QSFEIPEVSR EIKKAVKKDR HSKIYTAQGL RDRRVRLSIG VARQFFDLQD  120
MLGFDKASKT LDWLLNKSRK AIRELVQEKK LNNDDNDIGN NGGDLEEEED VDDDDDANKR  180
FLYGSSPEYC EEDVVCEVKK AEKRKKKSDS SNISSKGARA KDKGKAKERT RQMAYDHPET  240
FSDITHSEIM DPFKRSTIFN EGEDMAHPFY KEAMAEFNNQ ESILTKTKIN LPTNMDQSYN  300
QHYGTFLLKD QRSSSSYNTI LPQNLDFDYD QSPFVDQPFC AVTDTNFPRG IVWIQDSFLA  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-1492145154Putative transcription factor PCF6
5zkt_B7e-1492145154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in petal morphogenesis. {ECO:0000269|PubMed:17940055}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10019499m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391505.10.0transcription factor TCP1
SwissprotQ9FYG71e-173TCP1_ARATH; Transcription factor TCP1
TrEMBLV4MC460.0V4MC46_EUTSA; Uncharacterized protein
STRINGXP_006391505.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67332744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.11e-139TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]