PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10019141m
Common NameEUTSA_v10019141mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HD-ZIP
Protein Properties Length: 207aa    MW: 23463.6 Da    PI: 8.9875
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10019141mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.31.5e-1967122156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rrk+ ++tkeq + Lee F +n++++ ++++eLA+ l+L++rqV vWFqNrRa+ k
  Thhalv10019141m  67 RRKKLRLTKEQSHLLEESFIQNHTLTPKQKQELATFLKLSQRQVEVWFQNRRARSK 122
                      79999*************************************************98 PP
2HD-ZIP_I/II109.62.2e-3568157191
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                      +kk+rl+keq++lLEesF ++++L+p++K+ela+ L+l++rqv+vWFqnrRAR k+k++E+++e+Lk+++ +lke+n+rL+ eveeLr +l
  Thhalv10019141m  68 RKKLRLTKEQSHLLEESFIQNHTLTPKQKQELATFLKLSQRQVEVWFQNRRARSKLKHMEMECEYLKKWFGSLKEQNRRLQIEVEELR-AL 157
                      69*************************************************************************************9.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.13E-2053123IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-1857122IPR009057Homeodomain-like
PROSITE profilePS5007118.30164124IPR001356Homeobox domain
SMARTSM003891.9E-1866128IPR001356Homeobox domain
PfamPF000468.4E-1767122IPR001356Homeobox domain
CDDcd000861.92E-1667125No hitNo description
PROSITE patternPS00027099122IPR017970Homeobox, conserved site
SMARTSM003401.1E-12124167IPR003106Leucine zipper, homeobox-associated
PfamPF021836.1E-9124158IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MAVSPNSSSL ELTISIPSFS PSPSSGDHMV RDLDINQTPK MEEDREWIMI GATPHVNEED  60
NKSGGRRRKK LRLTKEQSHL LEESFIQNHT LTPKQKQELA TFLKLSQRQV EVWFQNRRAR  120
SKLKHMEMEC EYLKKWFGSL KEQNRRLQIE VEELRALKPL SASALTICPR CDRVADTADN  180
SSNAVQEGAA RSSQPRMPIS SSSSPC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16472GRRRKKLRL
26571RRRKKLR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00226DAPTransfer from AT1G70920Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10019141m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1758370.0AK175837.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-44-P21.
GenBankAK1759650.0AK175965.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-65-O17.
GenBankEU3391860.0EU339186.1 Arabidopsis thaliana HD-ZIP transcription factor 18 (ATHB18) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390823.11e-152homeobox-leucine zipper protein ATHB-X
SwissprotQ8GXM71e-109ATHBX_ARATH; Homeobox-leucine zipper protein ATHB-X
TrEMBLV4KAL81e-150V4KAL8_EUTSA; Uncharacterized protein
STRINGXP_006390823.11e-151(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133801624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70920.11e-102homeobox-leucine zipper protein 18
Publications ? help Back to Top
  1. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]