PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10019058m
Common NameEUTSA_v10019058mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family Whirly
Protein Properties Length: 242aa    MW: 26272.2 Da    PI: 10.4384
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10019058mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly217.21.6e-67642021139
           Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkal 94 
                      +++k+kaal+v++v+ptf  ++ gnl+++r+G++++++++a +erkydWekkq falsatev++l++++s++s+effhdp++k+sn+G+vrk+l
  Thhalv10019058m  64 AIFKGKAALSVEPVLPTFARIEPGNLRIDRRGSVMMTFMPASGERKYDWEKKQLFALSATEVGSLISMGSNDSSEFFHDPSMKSSNAGQVRKSL 157
                      59******************************************************************************************** PP

           Whirly  95 kvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                      +++P++dGsG+f++l+v+ns++k+ne+++vPv+ aef v++++++
  Thhalv10019058m 158 SIKPHADGSGYFISLTVNNSILKTNERIVVPVTTAEFVVMKTAFS 202
                      ******************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.101.4E-7353219IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544472.75E-6756219IPR009044ssDNA-binding transcriptional regulator
PfamPF085361.7E-5965199IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MMKQARTLLS SRSLCDQSKS LFEGNFKVSP LRGFATRADS STSARGFSGK DAAKPSGRVF  60
APYAIFKGKA ALSVEPVLPT FARIEPGNLR IDRRGSVMMT FMPASGERKY DWEKKQLFAL  120
SATEVGSLIS MGSNDSSEFF HDPSMKSSNA GQVRKSLSIK PHADGSGYFI SLTVNNSILK  180
TNERIVVPVT TAEFVVMKTA FSFALPHIMG WDRILGQADT AAQGITLHPK TDLPQLGVEW  240
V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A1e-105502192171Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B1e-105502192171Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C1e-105502192171Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D1e-105502192171Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that associates with mitochondrial DNA and may play a role in the regulation of the gene expression machinery. Seems also to be required to prevent break-induced DNA rearrangements in the mitochondrial genome. Can bind to melt double-stranded DNA in vivo. {ECO:0000269|PubMed:18423020, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:22762281}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10019058m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935321e-169AB493532.1 Arabidopsis thaliana At1g71260 mRNA for hypothetical protein, partial cds, clone: RAAt1g71260.
GenBankAY0721101e-169AY072110.1 Arabidopsis thaliana unknown protein (At1g71260) mRNA, complete cds.
GenBankAY1229611e-169AY122961.1 Arabidopsis thaliana unknown protein (At1g71260) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390788.11e-179single-stranded DNA-binding protein WHY2, mitochondrial isoform X1
SwissprotQ8VYF71e-130WHY2_ARATH; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLV4KAI81e-177V4KAI8_EUTSA; Uncharacterized protein
STRINGXP_006390788.11e-178(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM123582731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.11e-133WHIRLY 2