PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10019048m | ||||||||
Common Name | EUTSA_v10019048mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | LBD | ||||||||
Protein Properties | Length: 247aa MW: 27062 Da PI: 7.9711 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 96.1 | 3.8e-30 | 4 | 106 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C++C+vlr++C+++C + p++ +++q++++ +++k++G++ +++ll+a p++ r+++++sl+yeA+ r+ +P+yG+vg++++++++l+q Thhalv10019048m 4 SCNGCRVLRKGCSENCSIKPCLqwiksAESQANATVFLAKFYGRAGLMNLLNAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQ 97 6*********************9999777889************************************************************** PP DUF260 90 lkaelallk 98 +++e+++++ Thhalv10019048m 98 AAVEAVMRG 106 ***998766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.012 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.3E-25 | 4 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSENCS IKPCLQWIKS AESQANATVF LAKFYGRAGL MNLLNAGPDH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GNWHLCQAAV EAVMRGSPVT PIACDAAITG 120 QSPPFNNNKL FDIRHVSRDE NGLKSRCRSS RGANKQERNV RSSLSHESSL SHESTVVKDE 180 GSMVSSEETM TEEPSWIGLE LTLGLEPAMA RESHVVVPMK KRKLERCGTC NDEDTCKIEL 240 GLVCSE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10019048m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473870 | 1e-133 | AB473870.1 Arabidopsis thaliana ASL37 mRNA for ASYMMETRIC LEAVES2-like 37 protein, complete cds. | |||
GenBank | AK229650 | 1e-133 | AK229650.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL19-73-A22. | |||
GenBank | BT010943 | 1e-133 | BT010943.1 Arabidopsis thaliana At1g67100 gene, complete cds. | |||
GenBank | BT011650 | 1e-133 | BT011650.1 Arabidopsis thaliana At1g67100 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006391473.1 | 0.0 | LOB domain-containing protein 40 | ||||
Swissprot | Q9ZW96 | 1e-130 | LBD40_ARATH; LOB domain-containing protein 40 | ||||
TrEMBL | V4KCC3 | 0.0 | V4KCC3_EUTSA; Uncharacterized protein | ||||
STRING | XP_006391473.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15248 | 15 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67100.1 | 1e-128 | LOB domain-containing protein 40 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10019048m |
Entrez Gene | 18007938 |