PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10019036m | ||||||||
Common Name | EUTSA_v10019036mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | MYB_related | ||||||||
Protein Properties | Length: 253aa MW: 28616.5 Da PI: 8.9128 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.7 | 3.7e-15 | 90 | 133 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +++++Ed+l+++++++lG++ W++Ia +++ gRt+++++ rw +yl Thhalv10019036m 90 NFSKDEDDLILKLHALLGNR-WSLIAGRLP-GRTDNEIRIRWETYL 133 79******************.*********.************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.22E-18 | 68 | 143 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.775 | 83 | 137 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-14 | 87 | 135 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.60E-12 | 90 | 133 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-20 | 90 | 134 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.0E-14 | 90 | 133 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010023 | Biological Process | proanthocyanidin biosynthetic process | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MLLIIDHACL SQPTGPSQTS IYLLFPIYIY IYHLLLANNL TNNQVTISFE EVMNKIRLRA 60 LSPPSGLKRR AKQCRVRGRN NAKLELEQSN FSKDEDDLIL KLHALLGNRW SLIAGRLPGR 120 TDNEIRIRWE TYLKRKLEKM GIDPTNHRLY HHTNYISRRY LNSLHKEHEP NTTSDQSSSV 180 SESCDGMTTI LPVSSTNSSE YSTSAGHSRL PDLNIGPIPM KTTTSLPVCC LQDSSEPSNY 240 GSTSQETLLL FR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-14 | 69 | 138 | 40 | 109 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 66 | 72 | LKRRAKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10019036m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006390813.1 | 0.0 | transcription repressor MYB6 | ||||
TrEMBL | V4KAK9 | 0.0 | V4KAK9_EUTSA; Uncharacterized protein | ||||
STRING | XP_006390813.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71030.1 | 3e-88 | MYB-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10019036m |
Entrez Gene | 18009190 |