PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10018958m | ||||||||
Common Name | EUTSA_v10018958mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | TALE | ||||||||
Protein Properties | Length: 290aa MW: 32818.4 Da PI: 5.9221 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.9 | 4.7e-10 | 220 | 258 | 18 | 54 |
HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 lF+ ++yp+ +e+ LA+++gL+++qV++WF N R + Thhalv10018958m 220 LFQHflHPYPNDAEKLMLASQTGLSKNQVSNWFINARVR 258 5775569******************************98 PP | |||||||
2 | BELL | 100.1 | 1.7e-32 | 81 | 152 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e++el++k++kLlslle+V++r+ y++ql++vissFe +ag gs+k+Yt lAl+a++rhF +L++ai +q+ Thhalv10018958m 81 ENHELHIKISKLLSLLEQVEERFDIYCNQLEQVISSFEGIAGEGSSKVYTGLALQAMTRHFGSLQEAILSQL 152 689******************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 4.3E-13 | 11 | 150 | IPR006563 | POX domain |
Pfam | PF07526 | 4.0E-28 | 19 | 148 | IPR006563 | POX domain |
SMART | SM00389 | 4.3E-10 | 202 | 266 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.8E-28 | 207 | 268 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.45E-11 | 208 | 263 | No hit | No description |
SuperFamily | SSF46689 | 3.94E-18 | 208 | 271 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 8.5E-18 | 219 | 258 | IPR008422 | Homeobox KN domain |
PROSITE profile | PS50071 | 11.823 | 221 | 262 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MEEFRVTHEF SSLTSISLDS RYVKAVRCLL EEVIDIGGRE VELCNDILIQ QLFPGRRRSC 60 FGLSSQIKSE LCSSGFMSLP ENHELHIKIS KLLSLLEQVE ERFDIYCNQL EQVISSFEGI 120 AGEGSSKVYT GLALQAMTRH FGSLQEAILS QLSSLRRRFI ISQDLVPKII SSGLSQLSLF 180 DGNTSSSLQR LGLVQGPQRH AWKPIRGLPE TSVAILRAWL FQHFLHPYPN DAEKLMLASQ 240 TGLSKNQVSN WFINARVRLW KPMIEEMYRE EFGDSSDESM QREGNDDSN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 9e-18 | 208 | 269 | 5 | 66 | Homeobox protein Meis2 |
3k2a_B | 9e-18 | 208 | 269 | 5 | 66 | Homeobox protein Meis2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10018958m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ446432 | 0.0 | DQ446432.1 Arabidopsis thaliana clone pENTR221-At1g75430 homeodomain-containing protein (At1g75430) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006390303.1 | 0.0 | BEL1-like homeodomain protein 11 | ||||
Swissprot | Q1PFD1 | 0.0 | BLH11_ARATH; BEL1-like homeodomain protein 11 | ||||
TrEMBL | V4K988 | 0.0 | V4K988_EUTSA; Uncharacterized protein | ||||
STRING | XP_006390303.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9736 | 27 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75430.1 | 1e-179 | BEL1-like homeodomain 11 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10018958m |
Entrez Gene | 18009020 |