PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10018945m
Common NameEUTSA_v10018945mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 295aa    MW: 32738.2 Da    PI: 4.9286
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10018945mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.8e-1996147156
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                      s+y+G+r+++ +grW+AeIrdp     +  r++lg+f tae+Aa+a++  +k+++g+
  Thhalv10018945m  96 SRYRGIRRRP-WGRWAAEIRDPI----KgVRVWLGTFNTAEDAARAYDLEAKRIRGA 147
                      79********.**********72....46*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.37E-3296155No hitNo description
SuperFamilySSF541712.81E-2296155IPR016177DNA-binding domain
PfamPF008471.8E-1296146IPR001471AP2/ERF domain
SMARTSM003802.3E-3797160IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.5E-3197155IPR001471AP2/ERF domain
PROSITE profilePS5103224.2197154IPR001471AP2/ERF domain
PRINTSPR003673.6E-1198109IPR001471AP2/ERF domain
PRINTSPR003673.6E-11120136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0034059Biological Processresponse to anoxia
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MCGGAIIADY IAPSRSGRST ADLGKNVRAG NSSWRRDDVV DLTFDDFEGD FQDFESENDE  60
TGKFSPAKPL VFSSTRKPAG SNRSINGEDE RKKKSSRYRG IRRRPWGRWA AEIRDPIKGV  120
RVWLGTFNTA EDAARAYDLE AKRIRGAKAK LNFPNEDSAS SSSSRKRKAS PQPEVKPVQQ  180
IQEKHEAGDL GLPVASSVLS SSWLDFLWEE NNAETLQVDT QWLEDVIMGD DAKKKQKGCD  240
GEANVNAQLS EELLAFENQT ECFFQMPFMG VRNCGSTTSL SSLFDGCNDN DLWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2194154263ATERF1
3gcc_A2e-2194154263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00230DAPTransfer from AT1G72360Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10018945m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895755e-57AC189575.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011C10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390669.10.0ethylene-responsive transcription factor ERF073
SwissprotQ8H0T53e-84ERF73_ARATH; Ethylene-responsive transcription factor ERF073
TrEMBLV4JRP20.0V4JRP2_EUTSA; Uncharacterized protein
STRINGXP_006390669.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137371625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.21e-79ERF family protein
Publications ? help Back to Top
  1. Yang CY,Huang YC,Ou SL
    ERF73/HRE1 is involved in H2O2 production via hypoxia-inducible Rboh gene expression in hypoxia signaling.
    Protoplasma, 2017. 254(4): p. 1705-1714
    [PMID:27995331]