PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10018933m
Common NameEUTSA_v10018933mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 302aa    MW: 34614.9 Da    PI: 4.5787
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10018933mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.1e-161663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd++l+  ++ +G ++W++ ++  g+ R++k+c++rw +yl
  Thhalv10018933m 16 RGPWSPEEDLKLISFIQNFGHENWRSLPKQSGLLRCGKSCRLRWINYL 63
                     89******************************99************97 PP

2Myb_DNA-binding49.68.9e-1669114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T  E+e ++++++ +G++ W++Ia+ ++ gRt++++k+ w+++l
  Thhalv10018933m  69 RGNFTVAEEETIIKLHQNYGNK-WSKIASQLP-GRTDNEIKNVWHTHL 114
                      89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.6E-24766IPR009057Homeodomain-like
PROSITE profilePS5129414.4821163IPR017930Myb domain
SuperFamilySSF466896.74E-2914110IPR009057Homeodomain-like
SMARTSM007173.2E-121565IPR001005SANT/Myb domain
PfamPF002492.3E-141663IPR001005SANT/Myb domain
CDDcd001671.90E-81863No hitNo description
PROSITE profilePS5129425.10264118IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.0E-2767119IPR009057Homeodomain-like
SMARTSM007176.2E-1468116IPR001005SANT/Myb domain
PfamPF002492.3E-1469114IPR001005SANT/Myb domain
CDDcd001675.86E-971114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MGKGRAPCCD KTKVKRGPWS PEEDLKLISF IQNFGHENWR SLPKQSGLLR CGKSCRLRWI  60
NYLRPDVKRG NFTVAEEETI IKLHQNYGNK WSKIASQLPG RTDNEIKNVW HTHLKKRLVQ  120
SSRTTDHLTA DEPASSCSSY SVSRGKEEDV GKEAKSQVDD PLNRKTYQES TSVSSGGSNN  180
SNQDDDPNIS FMFEYSEFND IVIQEVDKPD LLDIPFDSDP DIWSFLDGSN SFQQSGANEK  240
TEEDSDEDEV KKWFKHLESE LGLKEDENQL HKQRTQDDDD EEEEEEEDSS SLLKTYELMI  300
H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-23161184105MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-23161184105C-Myb DNA-Binding Domain
1msf_C1e-23161184105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds DNA to the AC cis-elements 5'-ACCTACC-3', 5'-ACCAACC-3' and 5'-ACCTAAC-3' of promoters and specifically activates lignin biosynthetic genes during secondary wall formation mediated by SND1. {ECO:0000269|PubMed:19122102}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00249DAPTransfer from AT1G79180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10018933m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by UV light (PubMed:9839469). Triggered by salicylic acid and jasmonic acid (PubMed:16463103). Regulated by the SND1 close homologs NST1, NST2, VND6, and VND7 and their downstream targets MYB46 and MYB83 (PubMed:19122102, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19122102, ECO:0000269|PubMed:22197883, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1753441e-155AK175344.1 Arabidopsis thaliana mRNA for putative transcription factor (MYB63), complete cds, clone: RAFL21-78-M22.
GenBankAY5195721e-155AY519572.1 Arabidopsis thaliana MYB transcription factor (At1g79180) mRNA, complete cds.
GenBankBT0331251e-155BT033125.1 Arabidopsis thaliana unknown protein (At1g79180) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006389915.10.0transcription factor MYB63
SwissprotQ6R0A61e-145MYB63_ARATH; Transcription factor MYB63
TrEMBLV4M7U60.0V4M7U6_EUTSA; Uncharacterized protein
STRINGXP_006389915.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.11e-142myb domain protein 63
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Noda S, et al.
    The expression of a rice secondary wall-specific cellulose synthase gene, OsCesA7, is directly regulated by a rice transcription factor, OsMYB58/63.
    Planta, 2015. 242(3): p. 589-600
    [PMID:26070439]
  3. Vargas L, et al.
    Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants.
    Biotechnol Biofuels, 2016. 9: p. 139
    [PMID:27390589]