PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10018889m
Common NameEUTSA_v10018889mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 319aa    MW: 35151.9 Da    PI: 5.1469
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10018889mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH482.2e-154998255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     r +h+  E+rRR++iN++f+ Lrel+P++     +K + a+ L ++++Y+++Lq
  Thhalv10018889m 49 RSKHSVTEQRRRSKINERFQILRELIPNS----EQKRDTASFLLEVIDYVQYLQ 98
                     899*************************8....79******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-1845118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-2246120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.3554797IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.96E-1449102No hitNo description
PfamPF000109.4E-134998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-1153103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MRTGKGNLEE EDYGEEDFGS KREGPSSNNS NTAASRADSK ENDKASAIRS KHSVTEQRRR  60
SKINERFQIL RELIPNSEQK RDTASFLLEV IDYVQYLQEK VQKYEGSYPG WSQEPTKLTP  120
WRNNHWRVQS LANHPVAVSN GSGPVIPFPG KFDENTVVST PAIIAEMQNP VESDKGRAMV  180
CKPIDIQPEL DDKGLPPVQP IPPLVHGEQA NNECPATNDG LGQSNDMVIE GGTISISTVY  240
SHELLSSLTQ ALQNAGIDLS HAKLSVQIDL GKRANQGLTR DNPSNKNPSS SDIEGATQIR  300
DPNVEEESEH SQKRMKTL*
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10018889m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3526890.0AK352689.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-03-H22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391066.10.0transcription factor BIM2 isoform X1
SwissprotQ9CAA40.0BIM2_ARATH; Transcription factor BIM2
TrEMBLV4KEV10.0V4KEV1_EUTSA; Uncharacterized protein
STRINGXP_006391066.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59872745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-174BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]